Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00441 ATGTCTCAGTCGGAGAGTAAGAAGAAGAAGGAGCGCAGCAGCAGCAAGAAGGAAGAGGAGCAAGCAGCTAAAGATGAGGGGTTCATGATAAAACCTCAGAGCTTCACTCCCCCCATCGACACCTCCCAATGGCCCATCCTTCTCAAAAACTACGATCGCCTCAACGTACGCACCGGCCACTACACCCCTATCCCCTCCGGTCACTCCCCCCTCAAACGCCCCCTCCCTGAATACCTCAAATACGGCGTCATCAACCTCGACAAGCCCGCCAACCCTTCCTCCCATGAGGTCGTCGCCTGGATCAAGCGCCTCCTCAAAGTCGAGAAGACCGGCCACTCCGGTACCCTCGACCCCAAGGTCACCGGCAACCTAATCGTCTGTATTAACCGCGCCACTCGCCTCGTCAAGTCCCAGCAGGGTGCCGGCAAGGAATACGTCTGCATCGCCCGCCTCCATTCCGCTGTTCCCGACGTCTCCAAGGTCGGACGCGCCCTCGAGACCCTCACTGGCGCCGTCTTCCAGCGCCCGCCATTGATCTCTGCCGTCAAACGTCAGCTCCGCATCCGGACCATCTACGAAAGTAAGCTCCTTGAGTATGACCCTGATAGGCACTTAGTTGTTTTCTGGATTTCGTGTGAGGCTGGGACCTATGTTAGGACTATGTGTGTCCATTTGGGGTTGCTTCTTGGTGTGGGTGGCCATATGCAAGAGCTTAGGAGGGTTCGGTCTGGGATCATGGGGGAGAAGGATAACATGGTGAGCATGCATGATGTCATGGATGCCCAGTGGGTTTTGGGGAATGAACACGATGAGAATTATTTGAGGAGGGTTGTTATGCCCTTGGAGGTTCTTTTGACTAGCTATAAGAGGCTGGTTGTTAAGGACTCTGCTGTCAATGCTATTTGCTATGGTGCTAAGTTGATGATTCCTGGGTTGCTTAGGTTTGAGAATGATATTGATGTTGGGGAGGAGGTTGTGCTTATGACCACCAAGGGGGAGGCTATTGCTCTTGGGATTGCTGAGATGACTACAGCTGTTATGGCCACTTGTGATCATGGGGTTGTGGCCAAGATCAAGAGGGTTGTCATGGATAGGGATACTTATCCAAGGAAATGGGGTTTGGGACCTAGAGCTTCCATGAAGAAGAAGCTTATTTCTGAAGGGAAGCTGGATAAGCATGGGAAGCCCAATGAGAAGACTCCCCAGGAGTGGCTTAGGAATCTTGTTTTGCCCACCGGTGGGGATAGTGTGATTGCTGGTATGGCTGCTGCGCCGGAGTCTGTCGATGAGAAGGTCAAGAAGGACGGAGATGGGGAAGGAAGGAAGAGGAAGAAGCATGAAAGCACTGAAAGCCCAGTTTCGGTCCCTGTTAAGAAGGCAAAAGTGGATGTAGAAGAGATAAAGGTGAAAAAGGTAGCTGATGAGGCTGTGGAGGTTGAAGTTGACAAGAAAGAGAAGAAGAAGAAAAAGAAAGATAAGGATAACAGTGAAGTGGCCTCTTCGGATGAGGAGAAAACAACGGCGAAGAAGAAGCACAAGGATAAGGCTGAAGACGGTTCGCCGGAGTTAGACAAGTCTGAGAAGAAAAAGAAGAAAAAGAAAGACAAAGAAGCTGTTGCTGCTGCAGAAATTAGCAATGGAAAGGAGGATGACAGCAATGCTGATAAGAGTGAAAAGAAGAAGCATAAGAAAAAGAAAAGCAAAGATGCCGAGGAAGAATAG 1722 0.5064 MSQSESKKKKERSSSKKEEEQAAKDEGFMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPSGHSPLKRPLPEYLKYGVINLDKPANPSSHEVVAWIKRLLKVEKTGHSGTLDPKVTGNLIVCINRATRLVKSQQGAGKEYVCIARLHSAVPDVSKVGRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVLGNEHDENYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGMAAAPESVDEKVKKDGDGEGRKRKKHESTESPVSVPVKKAKVDVEEIKVKKVADEAVEVEVDKKEKKKKKKDKDNSEVASSDEEKTTAKKKHKDKAEDGSPELDKSEKKKKKKKDKEAVAAAEISNGKEDDSNADKSEKKKHKKKKSKDAEEE 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00441 573 NCBIfam uncharacterized domain 2 284 360 IPR004521 GO:0003723
Vimu2g00441 573 CDD PseudoU_synth_hDyskerin 80 262 - -
Vimu2g00441 573 Pfam PUA domain 289 361 IPR002478 GO:0003723
Vimu2g00441 573 CDD PUA_Cbf5 287 361 - -
Vimu2g00441 573 SMART pua_5 289 363 IPR002478 GO:0003723
Vimu2g00441 573 SUPERFAMILY PUA domain-like 288 369 IPR015947 -
Vimu2g00441 573 MobiDBLite consensus disorder prediction 1 34 - -
Vimu2g00441 573 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 4 559 IPR004802 GO:0006396
Vimu2g00441 573 Pfam DKCLD (NUC011) domain 41 98 IPR012960 -
Vimu2g00441 573 Gene3D Pseudouridine synthase 74 280 - -
Vimu2g00441 573 Coils Coil 553 573 - -
Vimu2g00441 573 Pfam TruB family pseudouridylate synthase (N terminal domain) 102 218 IPR002501 GO:0006396
Vimu2g00441 573 MobiDBLite consensus disorder prediction 1 26 - -
Vimu2g00441 573 MobiDBLite consensus disorder prediction 473 558 - -
Vimu2g00441 573 ProSiteProfiles PUA domain profile. 288 363 - -
Vimu2g00441 573 MobiDBLite consensus disorder prediction 473 573 - -
Vimu2g00441 573 SUPERFAMILY Pseudouridine synthase 41 286 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vimu2g00441 573 MobiDBLite consensus disorder prediction 421 457 - -
Vimu2g00441 573 MobiDBLite consensus disorder prediction 427 452 - -
Vimu2g00441 573 Pfam tRNA pseudouridylate synthase B C-terminal domain 219 285 IPR032819 -
Vimu2g00441 573 FunFam H/ACA ribonucleoprotein complex subunit CBF5 74 280 - -
Vimu2g00441 573 Gene3D PUA domain 41 372 IPR036974 GO:0003723
Vimu2g00441 573 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 48 373 IPR004802 GO:0006396
Vimu2g00441 573 SMART DKCLD_2 40 98 IPR012960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00441 Vimu-Chr2 2516763 2518484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00441 4 461 NAC Transcription Factor Family AT3G57150 83.188 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00441 K11131 - gmx:100806355 841.262