Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00438 ATGGGTCTGCGTCATCTCTCAAACTTGATGACGCCATTGCCAGAACTCTGTGCCTCACTTTGTCATGTGAGGAAGTCCGAGCCTTGTTCATCAGATTGCGAAGTTTGCCTCAGGATCTGCCTCACCAGTCCCGAATACCCTAATCATGATTCTCCGCCACCGCCGCCGCTGCCACAATTTCCCCCTTTCAATCCAGATAACGATGGCGCAGATGAATCAAACAGCCACAAAATAGCCACCTATTTGTTCCTTGCTCTTGCTATTCTAACCGTTGCTTTCTTTGTCGTTTGTTGTCGCACCATCTATACCAGGTTCAGCTCGAGGAGGAGGGAACCATCAAGGCACCCGCCAGAGAACACCGCCGATGATGATTTCGTTGATGAAGAGCATGGACCTGTGGTGGATCACCCCGTATGGTATATCCGAACCCTTGGGCTTCAGCAATCGATTATCAATGCCATCACAGTTTGTAAGTATAAGAAAGGTGAGGGCTTGATTGAAGGAACCGAGTGTGCGGTTTGCTTGAGTGAGTTTGAAGAGGATGAAAATCTCAGACTTTTGCCTAAATGCTATCATGCTTTTCATTTACCCTGTATTGATACCTGGCTTAGGTCTCATACCAACTGTCCCATATGCCGGGCTCCCATTGTTTCTGATCTTGCAACTGCTAGGTCGGAGTCTAGTTTTGTTGATTCAAATTCCTTTGGACATACCCATGTGGAAATTTTGGAAAATAGTGCTCCTGATTCTGAATTAGGAAATAGGTCAGAGGAAGAGGGCCAAGTGGAGGCTGAAGATGGATTTAGGGTTTGTGAAACTGAAATCCCAGTTGAAGAGGTGCCAGGCATTCTTCCTAGAAGATCTGTTTCTCTGGATTCCTTTTCTGTTGCAAATATCAATCGTGCTCTTGCAACATTGGGCTGTAATGCTAACTCAAAAAGAGTGCTGGGAAGCGTGGATGATGCTGCTGCTTCTTCTTCTTCTTCTTCAAAGGTGGGTTCTGGAAGCGATTTGGCAACCAATTCCAAAGGCAGCTCCTCTTTCAGGTTAACTAGGTATTTGCAGGGTGCTCCTGGTTCTTCAATGAAAAGGTCACAGTCCTATAATGGAAAGTACCTTCTGTCCTGGTACGGTCGTAATCAGAAGAAGCCAAATGCTCCTCTGAGAAGCTTTTAG 1176 0.4617 MGLRHLSNLMTPLPELCASLCHVRKSEPCSSDCEVCLRICLTSPEYPNHDSPPPPPLPQFPPFNPDNDGADESNSHKIATYLFLALAILTVAFFVVCCRTIYTRFSSRRREPSRHPPENTADDDFVDEEHGPVVDHPVWYIRTLGLQQSIINAITVCKYKKGEGLIEGTECAVCLSEFEEDENLRLLPKCYHAFHLPCIDTWLRSHTNCPICRAPIVSDLATARSESSFVDSNSFGHTHVEILENSAPDSELGNRSEEEGQVEAEDGFRVCETEIPVEEVPGILPRRSVSLDSFSVANINRALATLGCNANSKRVLGSVDDAAASSSSSSKVGSGSDLATNSKGSSSFRLTRYLQGAPGSSMKRSQSYNGKYLLSWYGRNQKKPNAPLRSF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00438 391 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 69 219 IPR044675 -
Vimu2g00438 391 MobiDBLite consensus disorder prediction 48 71 - -
Vimu2g00438 391 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Vimu2g00438 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 220 IPR013083 -
Vimu2g00438 391 Pfam Ring finger domain 170 213 IPR001841 -
Vimu2g00438 391 MobiDBLite consensus disorder prediction 48 63 - -
Vimu2g00438 391 SUPERFAMILY RING/U-box 164 219 - -
Vimu2g00438 391 MobiDBLite consensus disorder prediction 324 344 - -
Vimu2g00438 391 FunFam RING-H2 finger protein ATL54 146 219 - -
Vimu2g00438 391 CDD RING-H2_EL5-like 170 213 - -
Vimu2g00438 391 SMART ring_2 171 212 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00438 Vimu-Chr2 2510288 2511463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00438 65 217 C3H Transcription Factor Family AT1G72220 52.258 3.56e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00438 - - vun:114186636 663.685