Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00426 TTGGCGGATGGTAAGAAAGGGGTGGAAAAAAAATCCATTCATGTTCGTATTAACACCTGTGGCTCACCCCTTGAATTCCCTGAAACTTTTCCAAGCATTGGACGTGTTCGCGTGCAGCACCATGGAATTCTTCTCACTCTCAAAGGGATAGTGATTAGGTCTGGAGCAATCAAGATGCACGAAGGGGAGAGGACGTACATGTGTCACAAATGCAAAAACAGCTTCCCAGTACATCCTTTGGTGGAAGCTCGAAACTCGATATCATTACCTCCAATTTGCCCAATTCAGAATTCCAAGCCCTGTTCCGGCACGAAATTTCAGTATGTAGAGAACACTATAGTATGCCATGATTATCAGGAGATAAAAATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGGTCAATTCTTGTCATCTTAAAGGATGACCTCGTTGATGTTGTTAAAGCTGGAGATGATGTGATCGTCTCTGGTGTCTTAACAGCCAAATGGGCTCCAGAGTTGAAGGATGTGCGTTGTGACCTTGATCCTGTATTAATTGCCAACAATGTAAGGAGAGTCAATGAACTGAAGTCAGAAATTGATGTTTCTGACGATTTTGTTATGAAATTCAAGCAGTTTTGGGCTCACTTCAAAGATTCACCTCTAAAAGGGAGGAATGCTATTCTGCGAGGAATTTGCCCGCAAGTATTTGGCCTTTTCACTGTCAAGTTGGCTGTTGCATTAACTCTTATTGGAGGTGTGCAACATGTCGATGCTTCTGGAACTAGGATACGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCCGGCACCGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGTAACCGCTCTGTTATTACCACTGGATTGGGAAGCACAAGTGCTGGATTGACTGTTACTGCAGTGAAGGATGGAGGGGAATGGATGTTGGAAGCTGGAGCTCTTGTTTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGCATGAGGGAGCATGATAGAGCAACAATACACGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTCAGCACTAGAACAACTGTATTTGGTGCCACAAATCCCAAGGGACAGTATGATCCTGATCAACCTCTGTCTGTCAATACAACACTCTCTGGTCCTTTATTAAGCAGGTTCGATATTGTCCTTGTTCTATTGGATACAAAGAATCCTGATTGGGATGCAGTGGTTTCATCTCATATTCTTTCTGAGGCAGAATCGGATAGCATCACTAATGACGAAGATCTCGTAAATAGCTGGCCACTTGCTACACTCAAGAGGTACATACACTATGTGAAAGAACATTTCAGACCAGTCCTAACGAGAGAGGCTGAAATAGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAACTCATAATGCAGCTAGAACAACTGTCCGCATGTTGGAAAGTTTGATACGCCTAGCACAAGCCCATGCAAGGCTGATGTTCAGAAATGAGGTGACTCGACTAGATGCCATAACGGCTATTTTATGCATAGAATCATCCATGACTACCTCAGCTATCGTGGATTGCATTGGGAATGCTTTGCATTCCAATTTTGCTGACAACCCTGATCAGGAATGTATCCTTGCTGTCATTCTTTGCATAAATTATCCTTACATGCATTTAATATCACTATGA 1719 0.4299 MADGKKGVEKKSIHVRINTCGSPLEFPETFPSIGRVRVQHHGILLTLKGIVIRSGAIKMHEGERTYMCHKCKNSFPVHPLVEARNSISLPPICPIQNSKPCSGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVSGVLTAKWAPELKDVRCDLDPVLIANNVRRVNELKSEIDVSDDFVMKFKQFWAHFKDSPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRIRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAESDSITNDEDLVNSWPLATLKRYIHYVKEHFRPVLTREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFADNPDQECILAVILCINYPYMHLISL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00426 572 Gene3D - 196 534 IPR027417 -
Vimu2g00426 572 Pfam MCM AAA-lid domain 447 528 IPR041562 -
Vimu2g00426 572 PRINTS Mini-chromosome maintenance (MCM) protein family signature 348 361 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu2g00426 572 PRINTS Mini-chromosome maintenance (MCM) protein family signature 398 406 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu2g00426 572 PRINTS Mini-chromosome maintenance (MCM) protein family signature 320 334 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu2g00426 572 PRINTS Mini-chromosome maintenance (MCM) protein family signature 262 277 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu2g00426 572 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 11 534 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vimu2g00426 572 SMART mcm 29 530 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vimu2g00426 572 Gene3D - 60 116 - -
Vimu2g00426 572 CDD MCM9 224 528 - -
Vimu2g00426 572 SMART AAA_5 263 412 IPR003593 GO:0016887
Vimu2g00426 572 Pfam MCM P-loop domain 223 426 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu2g00426 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 538 IPR027417 -
Vimu2g00426 572 FunFam Probable DNA helicase MCM9 199 533 - -
Vimu2g00426 572 Pfam MCM OB domain 35 164 IPR033762 -
Vimu2g00426 572 SUPERFAMILY Nucleic acid-binding proteins 28 171 IPR012340 -
Vimu2g00426 572 Gene3D - 36 165 IPR012340 -
Vimu2g00426 572 ProSiteProfiles MCM family domain profile. 221 424 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00426 Vimu-Chr2 2454019 2464144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00426 5 556 Core DNA Replication Machinery Family AT2G14050 80.651 0.0 935
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00426 K10738 - gmx:100776255 1011.13