Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00423 ATGGAGTTCTTAAAGGACTATGATTTTGAACTACAATACCATCCGGGAAAAGCGAACGTGGTGGCTGACGCTTTGAGTAGAAAGACCGTCCATATGGCAGCTATGATGGTCCAAGAGATGAAACTGGTTGAAAGCTTTGGAGACCTAAGGCTCCAGTGTGAGCTAGAGCCGACTGGTATTCGGTGTTGTTATATGCAGCTGTCAAGCAATATCATTGATTGGATCAGAGAAAGGCAGGCGTTTGACGAGGAGTTGCAAAGGATTAGTAAACCGCACGGTGTGCCGCCACACAAGGACTTCAGCTCTGGAACGGACGGCTTATTAAGATATAATGGAAGGACTTGTGTTCCAAATGATGAAGAATTGAAAAGATTAATTCTGGAAGAAGCTCATCAAAGTCGTCTTAGTATACATCCAGGTATAACTAAGATGTACAAGGACCTTCGAATGTGTTTCTGGTGGCCAGGAATGAAACATGATGTAGCTCGGTTTGTGGAGTCCTGTTTAACCTGTCAAAGGGCTAAGATAGAATACCAGAAACCGAGCGGTCTCTTACAGCCACTAGAAATACCAGAGTGGAAGTGGGACAACATCGCTATGGATTTTGTGACTCACTTACCCCGAACGGTCAGAAACCATGATGCGATTTGGGTAATAGTTGATAGGCTGACTAAGAGCGCACATTTTCTTCCTATTAACTTGAAAATGCCTATGTCCAAGCTGGCTCAGCTATACATTAAAGAAATCGTCCGGCTACATGGAGTACCGTCCGATATAGTGTCAGACCGAGACCCAAGGTTCACCTCTCGGTTTTGGCAAACACTTCAACAAGAAATGGGAAGCAAACTTCAGATGAGTTCTGCCCACCATCCACAAACGGACGGCCAATCCGAGAGAACCATCCAAACTCTTGAAGACTTATTGAGAACCAGTGTTCTAGATCACTTAGGAGTTTGGGATGAAGTCTTGCCGTTAGCTGAGTTCACCTACAACAATAGTTTCCACTCGAGTATTGGGATGGCACCGTACGAAGCCCTCTATGGGAGAAAATGTCGAACGCCCCTTTGTTGGTTCCAAGAAGGGGAAGCAGTATTAACTGAACCGGAGATCATTCAACAGACAACGGAGAAGGTGAAGTTGATTCAGGAAAGGCTTAAAGCGTCTCAAAGCCGACTAAAGTCTTATGCCGATAGAAGAAGGAAGTCGTTGGAATTCGCTGCAGGAGACCATGTATTCCTCAAGCTGAACCGAACGACCGGAGTTGGAAGAGTCGTTCGACCAAAGAAGCTATCTCCCCGATTCCTTGGCCCGTACCAAATCCTGAGGCGCATTGGACCGGTCGCTTACGAGCTAGCCTTGCCTCCTCCTTTGTCCAACCTTCACCCCGTTTTTCATGTCTCTCAACTCCGAAAGTATATTGCTGACCCTTCACATGTACTTGAAGCTGACAACATTCAACTCAAGGAAGACTGTTCAGTTGAAGTCCAACCGGTGAGAATTGAAAAGAACATGACCAAGCGACCGTTCGGTAAATCCACTACTCTTGTCAAGGTCATCTGGGATGACCGAACGGGCGATGTCACTTGGGAGCGAGAGGAGGTCATGAAGGAAACCTACCCTCATCTATTCGAAGCGTCCGGCGGCAAGAAGAATGAAGGACTTCTGGTAGTGGAAACCAGTGGAACATATGGCATAACGCAAATGGCCGACCGTCCGAATTCCGACCACCCCTTCATCTCCGATCACCTTCCTCCTTTCAGATTTAATACTCCTGGTGTCAAGACCTTTCATCCTCACCGATCAGTTTTCCAATCGGAACACTTTGGACGTTCGGACAATCTTAAATATGAATTGTATGATAAATATAAACTTGGAGAAACTGTGAATCTGAGACCGAAGGTCATTAGGACCGTTCGGTTTTCCCCTAAAACGACCATTCTTATACCATTTATTCGGTTTCACACTGTTAATATTATTCATCCTGAGGACGTCCGGTCATGTAAAGCACTCGGTCATAGATCTAGTGTTCGGTTTTGTGAAATGTTTAGTCAGAAACTATTCGGTATTGATATGAATGTGGGAATGACTCCGGCGTTGTCCTTGATCCTGATATTCCGTGAGGACGCTTCCTCAAGTAGAGGGAGGTCGCTCATGCGTGGGAATGGCAGGAGGACTAACCTCGGGTGGCAGCTGGGAAACAGTTACTACACCACACCGGGTGCTAGGGACGACCGAGCTACATGTTCATACAGTCCGGACAGTGTCTTGTGGTCGGTCTTGACAGAGGATACCTTGGAAGCTACCTTGGAAGCTACTTTGGAAGAAACTCTGGAGGACGCAGTTCAGACCGAAGAACCAGTGGAAGCCGTGTCCGAGCGTTATGCTGGACCGTCCGGCTGGGGCTTGGACAAATATCGACACGTGGAAGAAAGAGAGGTAGACATCAGGAAAGTTGAAGGGAGAGGGGCAAGCAAAGCAAAGGGTGGGTTGCAGGTCTTCTTCCTCTTTCGCGGAGCCATGGAAAGCGATGACGATGTTGACATGCACGCAGCCGACGCCAACGAAGAATTGGATGACATGAAGAAGCGCTTGAAAGAGATGGAGGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGCCGCTACACTAAGGTTCTCTGCCACAGCAGCGCCTGTAGCCGCCAGGGGTTACTTGCCGCTATTGCTCTGCCAGCGCGCTAGTAATGTTGTTAACTTCTGTTTGAAAATCTGGAAGAACCGTTCTTTGATGCCTGGTCAGGCCAATAGAGAGGAAATAGATTCTCGATCAGTCTTTGTAGGCAATTATATTTCCAAGCAGTGGCATCCTGCTTTAATCGCAGGTCACGCTTCCACGTACAAGTTTTCTGGTTTTGTATTGCAGCAGTTGAAAATACTTCTTGATGACATTTTTAATGAGAAAAATTTGAAATTAAGTGGAAGAAGCAGGGAATGCAAAGGCATCACCTGTAGGCCAGCAAAGCATGAAACTTTGCATATGACTAACAAATTACGCACAAATCAGCTAATAATGGGAACCAAGGATAGTTGCAGGTACAGAAGTCTGCCCAGATATGATTCACTCAGAAACAGAGACTTCCAAACCACCAAGGCAGCACATCCCAGCAGCCATCTAGTTGCTCAAGATTGCAGGCAGAGCTTCAAATTACACTGTAGCAGCAGCAGCAATGGGATAAATTTTGCTACCACATGGACCAGGCAAAATATTTCTGCATCCCTGAAACTTTTCAGCTTGCTAAAACAGCCATGTTTCAGATATAACACATGGCGGCTAAGAGCTGATTTTGATTTTGTTTCTTCCTCAATCTTAAATGGGCTAGCCTATGGAGATTGCAAATATGGAAATACACAGAGCTTAGTTGTTCTGCCAAAGAAGGTGGACTATTCATGCACTCCTGAAGAAGTGCAACAGCATTTTCAGTCTTGTGGAACAGTAAACAGAGTCACCATTCGAACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTTGAATTCCTTGAGGTGGAAGCTGTTCAGGAGGCCCTTTCGTTGAATGAATCTGAACTTCATGGGCGCCAATTAAAGGTTAGAGAGTCAGAGGGTATTGCTGTTGAATATACTGTGACAGCTAAAAGGACCAATATACCAGGGATGAAACAGTATCGTTCCCGCCAGGCGAATCCTTACGCTGGGGGCTTTCGAGGCAGAACCCCATATGCACCTCCCTTTATCTATTCTCCATATGGATATGGGTCCCAAGGTTCAGAATGGCAATGCGCTACAGCCCCTACTATTAACTGTCCAATTCGGGTAGGATGGACTAAACTAAATGACTCCCTTCTACTCCTATGTAATGTCATGGTCGGAGTTTTGGCCATTGAACATGGGGGAGGAAAAATCCAACCAGTTCTAGACTGTGTCACAAGAAGAAACTCAGTAAAAGTGGCAGACAAACTCTGCAGCAACAATAAATTTCCCAACCTCGGGATGCGTCCGACTGCAAAGAGAATGAAGGATTTTTGGGTTAGTGGGAACCACGTGGCACCGGGAGAACTGGCCAGCTGTCCGGCTCTGGAAGAGCAATTAAGAAATTATACTCCTGGTGCGAAGACCTTTCGTTTGCACCGATTAGTTTCACGATCAGAGTTCTTGGACGTTTGGCCTATCTCTTAG 4197 0.4634 MEFLKDYDFELQYHPGKANVVADALSRKTVHMAAMMVQEMKLVESFGDLRLQCELEPTGIRCCYMQLSSNIIDWIRERQAFDEELQRISKPHGVPPHKDFSSGTDGLLRYNGRTCVPNDEELKRLILEEAHQSRLSIHPGITKMYKDLRMCFWWPGMKHDVARFVESCLTCQRAKIEYQKPSGLLQPLEIPEWKWDNIAMDFVTHLPRTVRNHDAIWVIVDRLTKSAHFLPINLKMPMSKLAQLYIKEIVRLHGVPSDIVSDRDPRFTSRFWQTLQQEMGSKLQMSSAHHPQTDGQSERTIQTLEDLLRTSVLDHLGVWDEVLPLAEFTYNNSFHSSIGMAPYEALYGRKCRTPLCWFQEGEAVLTEPEIIQQTTEKVKLIQERLKASQSRLKSYADRRRKSLEFAAGDHVFLKLNRTTGVGRVVRPKKLSPRFLGPYQILRRIGPVAYELALPPPLSNLHPVFHVSQLRKYIADPSHVLEADNIQLKEDCSVEVQPVRIEKNMTKRPFGKSTTLVKVIWDDRTGDVTWEREEVMKETYPHLFEASGGKKNEGLLVVETSGTYGITQMADRPNSDHPFISDHLPPFRFNTPGVKTFHPHRSVFQSEHFGRSDNLKYELYDKYKLGETVNLRPKVIRTVRFSPKTTILIPFIRFHTVNIIHPEDVRSCKALGHRSSVRFCEMFSQKLFGIDMNVGMTPALSLILIFREDASSSRGRSLMRGNGRRTNLGWQLGNSYYTTPGARDDRATCSYSPDSVLWSVLTEDTLEATLEATLEETLEDAVQTEEPVEAVSERYAGPSGWGLDKYRHVEEREVDIRKVEGRGASKAKGGLQVFFLFRGAMESDDDVDMHAADANEELDDMKKRLKEMEDEAAALREMQAKAATLRFSATAAPVAARGYLPLLLCQRASNVVNFCLKIWKNRSLMPGQANREEIDSRSVFVGNYISKQWHPALIAGHASTYKFSGFVLQQLKILLDDIFNEKNLKLSGRSRECKGITCRPAKHETLHMTNKLRTNQLIMGTKDSCRYRSLPRYDSLRNRDFQTTKAAHPSSHLVAQDCRQSFKLHCSSSSNGINFATTWTRQNISASLKLFSLLKQPCFRYNTWRLRADFDFVSSSILNGLAYGDCKYGNTQSLVVLPKKVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALSLNESELHGRQLKVRESEGIAVEYTVTAKRTNIPGMKQYRSRQANPYAGGFRGRTPYAPPFIYSPYGYGSQGSEWQCATAPTINCPIRVGWTKLNDSLLLLCNVMVGVLAIEHGGGKIQPVLDCVTRRNSVKVADKLCSNNKFPNLGMRPTAKRMKDFWVSGNHVAPGELASCPALEEQLRNYTPGAKTFRLHRLVSRSEFLDVWPIS 1398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00423 1398 ProSiteProfiles Integrase catalytic domain profile. 187 350 IPR001584 GO:0015074
Vimu2g00423 1398 CDD RRM_II_PABPs 1140 1204 - -
Vimu2g00423 1398 Pfam Integrase zinc binding domain 119 176 IPR041588 -
Vimu2g00423 1398 Gene3D - 1131 1209 IPR012677 -
Vimu2g00423 1398 Coils Coil 371 391 - -
Vimu2g00423 1398 SMART rrm1_1 1134 1205 IPR000504 GO:0003723
Vimu2g00423 1398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1140 1203 IPR000504 GO:0003723
Vimu2g00423 1398 Coils Coil 850 884 - -
Vimu2g00423 1398 SUPERFAMILY Ribonuclease H-like 187 347 IPR012337 -
Vimu2g00423 1398 PANTHER YALI0A06105P 13 396 - -
Vimu2g00423 1398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1133 1209 IPR000504 GO:0003723
Vimu2g00423 1398 SUPERFAMILY RNA-binding domain, RBD 1140 1209 IPR035979 GO:0003676
Vimu2g00423 1398 Gene3D - 184 391 IPR036397 GO:0003676
Vimu2g00423 1398 Gene3D - 85 175 - -
Vimu2g00423 1398 FunFam Retrovirus-related Pol polyprotein from transposon gypsy-like Protein 104 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00423 Vimu-Chr2 2429395 2440471 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00423 - - vun:114188334 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01244 11 13589541 13594396 Vimu2g00423 2 2429395 2440471 PCT