Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00412 ATGGAAGCCGCAGCGTTGAAAGTGGAGTCACTTGCGTGCATAGACTCCACCACTCTCTCTCACTCCGAGCTTCTCGCCCTTTCTCTCTCCTCTCTATGCGCCTTCGACCTTCGCGCCACCAATGACCTCGTCACACCCAAGATCGACCCCGCGCTCTTCAACGAGAGCGCCGGCTCCCGCCGCCAGACCTACTCCCGCCCCCAGTCCTCCCCGACGGGCCGTCGCCGCCGCCTCGCCGGCCTACTGCCCGCCCCCAAACCCCCTCCCCTCCCCGCTCACGACCCCGAGAACGCTGAAAACCGACTCATCATCGACTACCTTAAACAACTCATCCGAGAGGACCCCAAGTTCGACCAGGTCCACCTCGCTTCTCCTTCCCTTACCCCACCCAATGTCAAGCGCAAGCGAGGCCGCAAGCCCAAGCTCAAACTCCACCTTGAACACTGCTACCGCGGAATCGACATTCTTAACCGAAACGGCGTCGCTGTTGATCTCTCGCAGTTGGCCACCTCCCAAGACCCCTTCGCCGATGAGCTCAAGAGGCGCACAGAGGGTTTGAGCAGCGAAGAGGAGCTGTTAGGGTTTTTGAGGGACTTGCCTGGCCAATGGGGGAGCCGTAGGAAGAAACGAAGGATTGTTGATGCCTCGGATTTCGGCGATGTGTTGCCACTCAGTTGGAAGATTCTTCTCGGTTTGAAGAGGAAGGACGGTCGTGCGTGGATCTATTGCCGCAGATACATTAGGGCTTATCCTATATTTGATATTCCGCCGTGCAGCCCTAGTGGACAGCACTTTGTGTCTTGCAAAGAGGTTTCTTCGTATTTACAGTCTCTTCTGGGTAATGGTGATGGGCAATCGCAAAGTAGTCGCAGGAGTGAAAATGTAGTTCAGGAACAGATAGTACCTGCTGAAAATGTAAGTACACATTTTGTTGTCGTGGTTGATTTTGTTAAGGATTTGGCTCTTGGAGCATTTATAGAGTACAAAGTGCTCTCACAATTAACTAGAGAATCAGTGTCTGCTGGTGTCACTCCTGAACGTCAAGATCAGAGACAGATTGTTGCCGTTAACGCGGAGGTGCCTGGATTATTTGCGGGTGCTCATGAAAGAGTCAAGGAGGTTGCCTTGTTGGGAATTGAAAATCTTGCAGATGTGCATATTCAAGATCTGTTTGAGTGTCGCAAGTGCAATATGAGTTTTGATGAGAAGGATTCGTACTTGCAGCACCTGTTGTCAGTTCACCAGAGGACGACAAGGCGGTACCGGCTTGGTTCCTCTGTTGGAGATGGAGTTATAATTAAAGATGGGAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTGGAAAGGCGTCGTTACAATGGTCATGTGGGGATTCATGTTAGGAATTATGTGAGGAGAGTAGAAGATTCACCAGGTCAGATTAATGTCCAGAGGACAGATGACAAGTCTCCAGTCAGGGAGGACATGCCGTTAAGGATATCTAAGATGGATGCCCTCATTGAAATTGCTCAAAACTCTATTATGGAGGGTTGCGTCACGGAATCCCATCATTTAGCTAAACTGAATGGTATTCCTGCTTCGGATGTTGCTGTTGGTTACTTGGACCAAGATGGAAACTCTGAGGCTCCAATCAGTGAAAAGCAGATGGAAGATAGCTTGACTAAGAAAAATGTGGATTATCATGGAATGGATGGAAAGGTAGAGGAAGTTGATGATGATAACCGTGTGATAGATGTAAAAATGGTTTCTTTTCTTGATAACATGGGTTTGTTATCTGTAAATAAGCAAGATGTTAAAGCATCCGAGACTTCCGAAATAAAAGATGACGTAGAATTGACTATTGAGGAACTGGATCAATCTGGGATTGATTTGGATGGTGTTTCTGAAGTTCGTATACTTCCTTTATCTGAACTTAACATGATACCAGAATCTGAAAAGGGTGAAAATTCTGAATCTTCTAATGCTAAAGTTCAGTTTAAACCTGATGAAGGCATTAGTAACAAGAGTGAGTTAGAATTTGGTTTAAATTGCTTGAAAGATGTACCTGTTACCGTTAGTACTAATGTCCAAGAGATGGTAATGGCAGCTTCTGAAGAAAATGTGGTACATTCTAGGGCTTTTAACTCCTCTATATCCACAGAACAACCTATGGATTGTTTGCCTGCATTCAGCTCTGATAAGGGAGGAAAACAGTTTTGCAGTCTTGAAAATGAAAATGAGAACGTGAAGGGTCTCGAGGAATTGAGGTTTGATGAAATAGATAGTGTTGATTATGATTTTGCAAGGATTCAGGATTCTCCTTCTCCGCCTGCTGTATCAGCTGAATTGGCCAATGACACAGTGATGGAAGAGACGTATTTATCCGCAGTTCAGTTTGAATCACAGCTTACAACTGTATGTGTATGGTGTGGAATAGAGTTTAACCATGACGCTGTCAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAAGCAAAAATCTCTGGTCAAATCAACGTGTTGGACTGTGAATCGCCAAATGCTGGCTGTCTATAG 2553 0.4638 MEAAALKVESLACIDSTTLSHSELLALSLSSLCAFDLRATNDLVTPKIDPALFNESAGSRRQTYSRPQSSPTGRRRRLAGLLPAPKPPPLPAHDPENAENRLIIDYLKQLIREDPKFDQVHLASPSLTPPNVKRKRGRKPKLKLHLEHCYRGIDILNRNGVAVDLSQLATSQDPFADELKRRTEGLSSEEELLGFLRDLPGQWGSRRKKRRIVDASDFGDVLPLSWKILLGLKRKDGRAWIYCRRYIRAYPIFDIPPCSPSGQHFVSCKEVSSYLQSLLGNGDGQSQSSRRSENVVQEQIVPAENVSTHFVVVVDFVKDLALGAFIEYKVLSQLTRESVSAGVTPERQDQRQIVAVNAEVPGLFAGAHERVKEVALLGIENLADVHIQDLFECRKCNMSFDEKDSYLQHLLSVHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRRVEDSPGQINVQRTDDKSPVREDMPLRISKMDALIEIAQNSIMEGCVTESHHLAKLNGIPASDVAVGYLDQDGNSEAPISEKQMEDSLTKKNVDYHGMDGKVEEVDDDNRVIDVKMVSFLDNMGLLSVNKQDVKASETSEIKDDVELTIEELDQSGIDLDGVSEVRILPLSELNMIPESEKGENSESSNAKVQFKPDEGISNKSELEFGLNCLKDVPVTVSTNVQEMVMAASEENVVHSRAFNSSISTEQPMDCLPAFSSDKGGKQFCSLENENENVKGLEELRFDEIDSVDYDFARIQDSPSPPAVSAELANDTVMEETYLSAVQFESQLTTVCVWCGIEFNHDAVNSEIQPDSVGFMCPACKAKISGQINVLDCESPNAGCL 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00412 850 ProSiteProfiles Zinc finger C2H2 type domain profile. 391 419 IPR013087 -
Vimu2g00412 850 ProSitePatterns Zinc finger C2H2 type domain signature. 393 414 IPR013087 -
Vimu2g00412 850 MobiDBLite consensus disorder prediction 54 97 - -
Vimu2g00412 850 ProSitePatterns Zinc finger C2H2 type domain signature. 440 460 IPR013087 -
Vimu2g00412 850 Gene3D Classic Zinc Finger 380 463 - -
Vimu2g00412 850 ProSiteProfiles Zinc finger C2H2 type domain profile. 438 465 IPR013087 -
Vimu2g00412 850 MobiDBLite consensus disorder prediction 56 72 - -
Vimu2g00412 850 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 4 644 IPR037472 -
Vimu2g00412 850 SMART c2h2final6 438 460 IPR013087 -
Vimu2g00412 850 SMART c2h2final6 391 414 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00412 Vimu-Chr2 2353309 2357157 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu2g00412 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00412 - - var:108341719 1337.78