Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00406 ATGGATTGTTTCTGTTGCTTCCATCAGGTGGTTGGAGGACGCTCTTCATGTAGCTCCGGCAAGGGCAGGAGCTATCTGTTTCCAGTTAAGTATGGTTTTAGCCTAGTTAAAGGGAAAGCAAACCACCCAATGGAGGACTATCATGTAGCAAAAATTGTCAAGTACGAAGGGAATGAGTTAGGACTTTTTGCTATATATGATGGACATTTGGGAGACAGTGTGCCAGCCTATTTACAAAAGCATCTCTTTTCTAATATCTTGAAGGAGGAGGACTTCTTGACAGATCCTGCAAATTCTATCATTAAAGCTTACGAGACAACAGATCAGGCCATTCTTTCTCACAGTTCTGATTTGGGGCGAGGAGGATCTACTGCAGTCACTGCAATTCTTATTAATAATCAGAACTTATGGGTCGCAAATGTTGGAGATTCACGAGCAGTTCTGTCAAGGAAGGGGGTTGCCATTCAGATGACCATTGATCATGAGCCAAATACTGAGAGGGGCTTCATCGAGAACAAAGGAGGCTTTGTCTCAAACATGCCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGAGCATTTGGTGACAAAAATCTAAAATCACACTTGCGATCTGATCCTGATGTACATCCTTTTGATATAAACTCAGATGCTGAGCTTTTGATACTTGCTAGTGATGGTCTTTGGAAGGTAATGGCAAACCAAGAAGCAGTTGATATTGCTAGAAGGATAAAAGATCCACAAAAGGCAGCAAAAAAGCTAGTTGCGGAGGCATTGAACAAAGACAGCAAGGATGATATTTCGTGCATTGTAGTTCGTTTCAAGGGTTGA 840 0.4238 MDCFCCFHQVVGGRSSCSSGKGRSYLFPVKYGFSLVKGKANHPMEDYHVAKIVKYEGNELGLFAIYDGHLGDSVPAYLQKHLFSNILKEEDFLTDPANSIIKAYETTDQAILSHSSDLGRGGSTAVTAILINNQNLWVANVGDSRAVLSRKGVAIQMTIDHEPNTERGFIENKGGFVSNMPGDVARVNGQLAVSRAFGDKNLKSHLRSDPDVHPFDINSDAELLILASDGLWKVMANQEAVDIARRIKDPQKAAKKLVAEALNKDSKDDISCIVVRFKG 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00406 279 Gene3D - 26 279 IPR036457 -
Vimu2g00406 279 Pfam Protein phosphatase 2C 39 270 IPR001932 -
Vimu2g00406 279 FunFam Probable protein phosphatase 2C 39 22 278 - -
Vimu2g00406 279 ProSiteProfiles PPM-type phosphatase domain profile. 30 277 IPR001932 -
Vimu2g00406 279 SMART PP2C_4 26 275 IPR001932 -
Vimu2g00406 279 CDD PP2Cc 29 277 IPR001932 -
Vimu2g00406 279 SUPERFAMILY PP2C-like 22 278 IPR036457 -
Vimu2g00406 279 SMART PP2C_SIG_2 41 277 IPR001932 -
Vimu2g00406 279 PANTHER PROTEIN PHOSPHATASE 30 277 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00406 Vimu-Chr2 2330067 2332713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00406 1 278 PP2C-type Phosphatase Gene Family AT1G22280 69.686 1.43e-139 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00406 K17506 - gmx:100787659 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01261 11 13840670 13849768 Vimu2g00406 2 2330067 2332713 PCT