Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00405 ATGGCGGAGGGAGCTGGTTATGGGTTGCGTCGTCCATTAGATATTCAGCAACTACAATTTGAAGCCCAGCATCGGTGGTTGCGACCTGCAGAAATTTGTGAAATTCTTCGTAATTATCAGATGTTTCAAATCACTTCAGAACCTCATAATAGGCCACCAAGTGGTTCACTTTTTCTATTTGATAGAAAGGTTTTGAGGTACTTTAGAAAGGATGGACATAATTGGAGAAAGAAAAAGGATGGAAAGACCGTGAAAGAAGCTCATGAAAAGTTGAAGGGTAACAAAAATATTGTAGTAAATACTGAAGGTGATGAGGTCCCGCTAGATTCCCAAAAGGTTACTTCACTTAGCACAGATTCCGTCAGCCCATCATCCAGTTTGATGTCTTTACGTGAAGATGCTGATTCTGAGGATGTCTACCAAGCTAGTTCTGGGTTGCGGCCACTACATGAGTCACAACATATGGGGAATGGTCCATTGCCAGAAAAGATTGATGCTGGTTTGAATAGTTCATATCATACGAGTCCCTTTTCAGGTGATCATGGACAGTCATCAATTTCTGGAACAGATTATATCCCAGTTGTTCACGGGGATAACTTTAGAGGAAATGACACTCCTTATTTTGATGGTGAGAAAACACATGGCATGGCACCATGGGACACTGTCTTGCAAAGCACTGCCAAATTGCACAATGATCCTTCTCTTGCATCGTTTCCTTCCATCCCTCCTAGTTCAATGGGTAATGTCCTTGAACAAGAACATACCATTTATGGTGACCTTTTAACAGGCAAAAGAGATCTCACTGAGGAAGAAGAGAGCTCTCGGTCTTTCCAACCGAGTTGGCAGATTCCTTTCGAAGACAATTCAGGAGACATGCCAATGTCAAGCCAGAATCAACCATTTGGTCTGCATTATGTATCTGATTATGGCACCAGTTTACTAGGGTATGGAGCTCGTAATGCAAGCTCTGAAATTGCTCCAATCCTGTACAGTTTTAATGGTGATCCAAAAGAGCAGCTTTTGCAGAAAAACTATCCACAAGAGCATGCAGATGGACAATCTCAACATACTCTAAAATCCAATTCTGCAAATAAAGTTCCTGATGAAGAATCTATCAACTATGGCTTAACTGTGAAGCGTACGTTATTGGACAAAGATGAGAGCCTGAAGAAGGTTGATAGTTTCTCTCGTTGGGTTACTAAAGAACTTGGAGAGGTAGCTGATTTGAATATGCAGTCCACACCTGGTATTTCATGGAGTACAGATGAATGCCAGCATGTGATAGATGATAGCTCATTGAGCCCATCTCTCTCTCAGGACCAACTGTTTAGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTTAGATATTGAGGTGTTGATTATTGGATCCTTTTTGAAGAGTCAACCAGAGGTGACAACATGTAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCAGCTGAGGTTTTAGCTGATGGAATTTTGTGCTGCCAAGCTCCCCGTCATAAAGTTGGACGGGTCCCATTCTATGTAACATGTTCCAATAGGCTAGCTTGTAGTGAAGTGCGGGAATTCGATTTCAGAGAAGGCTTTGCTAGAAATGTAGATTTTGCAGAATTTTTTGGCAGTTCAACTGAAATGCGCATTCATTTGCGACTGGAGAAATTTCTTACTTTAAAGCCAGTGAACCCTTCAAACCATTCTTTTGAGGGTGATATGGAGAAAAGGAACTTAATTTTCAAGCTTATTTCACTGAGAGAGGAAGAGGAATATTCTATTAAGGACGAGCCAACTAAAGAATTGGATATATCCCAACACATGGTGAGGGAGCATCTTTTTCACAGGCAGGTTAAAGAGAAGTTGTACTCATGGCTTCTTCACAAAGTAACTGAGAATGGTAAAGGACCAAATGTATTAGATGAGGATGGGCAAGGTGTGCTACACTTAGCAGCTTTTCTTGGTTATGACTGGGCCATAAATCCAATTATAGCTGCTGGAGTTAATATCAACTTCCGAGATGTGAATGGATGGACAGCTCTTCACTGGGCTGCATTCTGTGGCAGAGAGCGGACAGTTGCTTTCCTGGTCTCCATGAGAGCAGATTGTGGAGCAGTGACAGATCCATCTCCTGCATTTCCGTCAGGTAGACCAGCTGCAGATCTTGCCTCTGCAAACGGGCACAAAGGAATCTCTGGTTTTCTTGCTGAGTGTTCATTAACTCAAAATCTTGAATCCCTCAAAGTGGATGATCAAAATGGTAGTCGGCAAGAAATTTCAGGAATGAAAGTGGTGCAGACAGTTTTAGAACGAACTGCAACACCTATGCTCTATGGTGATATGCCAGATGTCCTCAGCATGAAGGATTCGCTCACTGCTGTCCGAAATGCAACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGATGTTAACTGAGTATGAGGGTGATGATGAGCTTGGATTGTCAGATCAGCAAGCTCTATCTCTTCTAGCTTCTAGGGCTTGTAAATCTGGACAAGGACATGGTTTAGCCAATGCTGCTGCAATACACATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATGATTCGGCAAAGAGTTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTACGGAAGCAGTATAAACCAATCATCTGGTCTGTGGGGATCCTAGAAAAGGTCATATTACGTTGGAGGCGCAAGGGTAGTGGTTTGCGTGGATTTCGACCAGATGCGCTTAACAAAGTCCCCAGTCAACAAAATGATTCTCAGAAAGAGGATGATTATGATTTCCTCAAGGAGGGACGGAAACAAAAGGAAGAAAAGATCCAAAAGGCCTTATCAAGAGTGAAGTCCATGGTTCAGTATCCAGAGGCACGTGCCCAATACCGACGTCTGTTAAATGTTGTCGAGGACTTCCGTCAAACCAAGGGAACTAACGAGGGTTTGACCAGTTCTGAAGGGACAGTTGATGGTGTGGAGGATTTAATTGATATTGATATGCTTTTAGACGACGATAATTTCATTCCTATAGCATTTAACTGA 3093 0.4229 MAEGAGYGLRRPLDIQQLQFEAQHRWLRPAEICEILRNYQMFQITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKGNKNIVVNTEGDEVPLDSQKVTSLSTDSVSPSSSLMSLREDADSEDVYQASSGLRPLHESQHMGNGPLPEKIDAGLNSSYHTSPFSGDHGQSSISGTDYIPVVHGDNFRGNDTPYFDGEKTHGMAPWDTVLQSTAKLHNDPSLASFPSIPPSSMGNVLEQEHTIYGDLLTGKRDLTEEEESSRSFQPSWQIPFEDNSGDMPMSSQNQPFGLHYVSDYGTSLLGYGARNASSEIAPILYSFNGDPKEQLLQKNYPQEHADGQSQHTLKSNSANKVPDEESINYGLTVKRTLLDKDESLKKVDSFSRWVTKELGEVADLNMQSTPGISWSTDECQHVIDDSSLSPSLSQDQLFSINDFSPKWAYAELDIEVLIIGSFLKSQPEVTTCNWSCMFGEVEVPAEVLADGILCCQAPRHKVGRVPFYVTCSNRLACSEVREFDFREGFARNVDFAEFFGSSTEMRIHLRLEKFLTLKPVNPSNHSFEGDMEKRNLIFKLISLREEEEYSIKDEPTKELDISQHMVREHLFHRQVKEKLYSWLLHKVTENGKGPNVLDEDGQGVLHLAAFLGYDWAINPIIAAGVNINFRDVNGWTALHWAAFCGRERTVAFLVSMRADCGAVTDPSPAFPSGRPAADLASANGHKGISGFLAECSLTQNLESLKVDDQNGSRQEISGMKVVQTVLERTATPMLYGDMPDVLSMKDSLTAVRNATQAADRIHQVFRMQSFQRKMLTEYEGDDELGLSDQQALSLLASRACKSGQGHGLANAAAIHIQKKFRGWKKRKEFLMIRQRVVKIQAHVRGHQVRKQYKPIIWSVGILEKVILRWRRKGSGLRGFRPDALNKVPSQQNDSQKEDDYDFLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKGTNEGLTSSEGTVDGVEDLIDIDMLLDDDNFIPIAFN 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00405 1030 SUPERFAMILY Ankyrin repeat 305 739 IPR036770 -
Vimu2g00405 1030 Pfam Ankyrin repeats (3 copies) 625 706 IPR002110 GO:0005515
Vimu2g00405 1030 Pfam CG-1 domain 21 99 IPR005559 GO:0003677
Vimu2g00405 1030 ProSiteProfiles IQ motif profile. 877 901 IPR000048 GO:0005515
Vimu2g00405 1030 ProSiteProfiles Ankyrin repeat profile. 645 677 IPR002110 GO:0005515
Vimu2g00405 1030 MobiDBLite consensus disorder prediction 925 944 - -
Vimu2g00405 1030 SMART ANK_2a 717 746 IPR002110 GO:0005515
Vimu2g00405 1030 SMART ANK_2a 645 674 IPR002110 GO:0005515
Vimu2g00405 1030 SMART ANK_2a 678 707 IPR002110 GO:0005515
Vimu2g00405 1030 SUPERFAMILY E set domains 445 530 IPR014756 -
Vimu2g00405 1030 Gene3D Immunoglobulins 438 533 IPR013783 -
Vimu2g00405 1030 MobiDBLite consensus disorder prediction 347 367 - -
Vimu2g00405 1030 FunFam Calmodulin-binding transcription activator 2 853 901 - -
Vimu2g00405 1030 Gene3D - 854 900 - -
Vimu2g00405 1030 MobiDBLite consensus disorder prediction 100 186 - -
Vimu2g00405 1030 FunFam Calmodulin-binding transcription activator 2 438 534 - -
Vimu2g00405 1030 ProSiteProfiles CG-1 DNA-binding domain profile. 15 150 IPR005559 GO:0003677
Vimu2g00405 1030 MobiDBLite consensus disorder prediction 107 130 - -
Vimu2g00405 1030 Coils Coil 945 965 - -
Vimu2g00405 1030 Pfam IQ calmodulin-binding motif 856 874 IPR000048 GO:0005515
Vimu2g00405 1030 Pfam IQ calmodulin-binding motif 879 898 IPR000048 GO:0005515
Vimu2g00405 1030 SMART CG_1_2 18 201 IPR005559 GO:0003677
Vimu2g00405 1030 Pfam IPT/TIG domain 445 519 IPR002909 -
Vimu2g00405 1030 MobiDBLite consensus disorder prediction 168 186 - -
Vimu2g00405 1030 Gene3D - 614 800 IPR036770 -
Vimu2g00405 1030 SMART iq_5 853 875 IPR000048 GO:0005515
Vimu2g00405 1030 SMART iq_5 876 898 IPR000048 GO:0005515
Vimu2g00405 1030 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 141 992 - -
Vimu2g00405 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 854 904 IPR027417 -
Vimu2g00405 1030 ProSiteProfiles Ankyrin repeat profile. 678 710 IPR002110 GO:0005515
Vimu2g00405 1030 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00405 Vimu-Chr2 2312500 2323367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00405 1 996 CAMTA Transcription Factor Family AT5G64220 50.617 0.0 977
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vimu2g00405 Ank_2 1e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00405 K21596 - gmx:100818124 1752.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01272 11 14025229 14035443 Vimu2g00405 2 2312500 2323367 PCT