Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00404 ATGGCTTCGTCTCTTTCATTTCCGATCCTCATTCCGTTCGCAATGGAATCCCCGTCGTGTGTGACGGTGCCGCATATGGCATTTTCCAAACCTCCGAAGCACCACCGTCCGTTGGTCAGAGGTCGAGTCAGAGTTAGACCGCTAAATCGCCGCCTCAACTGCGCTACGCTGTTCCGGTGCTCTTCCGTCGTGGACGACGCTGTCATCACCCTTCACGTTGGGGGAATGATGTGCGAAGGATGCGCTAATAGCGTCAAAAAGCTTTTAGAAAGCCGACCTCAAGTGTTGTCTGCTCGGGTAAATTTGGCATCAGAGACAGCAATTGTTTCGCCTGCTCCTGAAGAAAAACCGGCACCAAATTATCTAAAGCAATTAGGGGAGGAACTTGCACAGCATTTAACTACCTGTGGTTTTACATCTACCCTTCAAGGTGTGGTTTATTATGTTGTTGTTTCTATTTGGACCTTAGCTTCTTGTTCCCTAACTAACCTCCATCCATTGCCACTTACCCCCTTTGGTAGTACATCTATCCTAGAGCACACGCTTCTCGATCCTCTTGGTAGTGAGATTGAAGGAGAATTGAAGCCACTGTGGTGCTGCTCTTGCCATTTTTCTCACCCTTGCTTTTCACAACCACAATTCTATGCTAACAACCCCAAACTTTTACTTTTGGGAAAATTGGCTTGTCTTTCGTTAAAATTGGACAAGATTGTTCCACGCTTTGAATATACACTTGATGGGTCTTCTAAGGTTTCAACTTTGTTGCACTACTCAAAGTATAAGGAAGACATGCACCAAAGGTTCCCATCACTAATAGTTGTAGCAAGCAATATTTTGATGTTCTCTATGCCTAATACAGCTTTGGCTGAAACTTGTGAGGCTGATAACTCTTTTTTCAATATGCCTATATTGCTAGCGGTAGCCCTCATTGGAGCCACAGTTGGAGGGTTGCTTGCTCGGCAAAGAAGAAATGAATTACAACGGGTAAACGAGCAATTAATCCAAATCAATGCAGCATTAAGGAAGCAAGCCAAAATCGAGTCTTATGCTCCTAGCTTGAGTTATGCTCCCATTGGTGGTGGTAGGATACCTGATAATGAAATTATTGTTGACCCAAAGAAGCAAGAACTAATTTCTAAGTTGAAAAATGGAAAGAACTTTCTAAGGAATCAACAGTTGGATAAAGCATTCATAGAGTTTAAGAATGCACTTGAGCTTGCCCAGAATCTAAAGGATCCTATCGAAGAAAAAAAGGCTGCCAGAGGTTTAGGAGCCTCATTGCAAAGACAGGGAAAATATCGAGATGCTATAAAATACCATTCCATGGTTTTGGCCATCTCTGAACGAGAAGGGGAGGACTCAGGCAATACAGAGGCGTTTGGGGCAATTGCTGATTGTTACACTGAGCTTGGAGAGCTTGAGAAAGCAGGCCAATTCTATGACAAATATATTGCAAGACTAGAAAAGGACTAA 1473 0.4352 MASSLSFPILIPFAMESPSCVTVPHMAFSKPPKHHRPLVRGRVRVRPLNRRLNCATLFRCSSVVDDAVITLHVGGMMCEGCANSVKKLLESRPQVLSARVNLASETAIVSPAPEEKPAPNYLKQLGEELAQHLTTCGFTSTLQGVVYYVVVSIWTLASCSLTNLHPLPLTPFGSTSILEHTLLDPLGSEIEGELKPLWCCSCHFSHPCFSQPQFYANNPKLLLLGKLACLSLKLDKIVPRFEYTLDGSSKVSTLLHYSKYKEDMHQRFPSLIVVASNILMFSMPNTALAETCEADNSFFNMPILLAVALIGATVGGLLARQRRNELQRVNEQLIQINAALRKQAKIESYAPSLSYAPIGGGRIPDNEIIVDPKKQELISKLKNGKNFLRNQQLDKAFIEFKNALELAQNLKDPIEEKKAARGLGASLQRQGKYRDAIKYHSMVLAISEREGEDSGNTEAFGAIADCYTELGELEKAGQFYDKYIARLEKD 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00404 490 Gene3D Tetratricopeptide repeat domain 372 490 IPR011990 GO:0005515
Vimu2g00404 490 FunFam Copper-transporting ATPase PAA1, chloroplastic 67 142 - -
Vimu2g00404 490 SUPERFAMILY HMA, heavy metal-associated domain 68 117 IPR036163 GO:0046872
Vimu2g00404 490 ProSiteProfiles Heavy-metal-associated domain profile. 67 134 IPR006121 GO:0046872
Vimu2g00404 490 PANTHER PROTEIN FLUORESCENT IN BLUE LIGHT, CHLOROPLASTIC 253 490 IPR044243 GO:0015995|GO:0033014
Vimu2g00404 490 Pfam Heavy-metal-associated domain 70 117 IPR006121 GO:0046872
Vimu2g00404 490 ProSitePatterns Heavy-metal-associated domain. 73 102 IPR017969 GO:0046872
Vimu2g00404 490 SUPERFAMILY TPR-like 384 485 IPR011990 GO:0005515
Vimu2g00404 490 Gene3D - 65 145 - -
Vimu2g00404 490 CDD HMA 70 141 IPR006121 GO:0046872
Vimu2g00404 490 Pfam Tetratricopeptide repeat 420 489 - -
Vimu2g00404 490 Coils Coil 319 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00404 Vimu-Chr2 2304753 2309572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00404 62 141 Primary Pumps ATPases AT4G33520 62.500 1.70e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00404 - - vra:106775694 519.235