Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00397 ATGAATATTTCATTCATTATCAATGTGGTTCTTCTGCTTGCAATTATACTGCTCTTGCTGCTTTACTACAACACATACACGAGGCTGAATAAAATAGTGAAGGGGCAGATTCACACAGTCATAGAAAAAGAGGATGACGTGGAGATCGGTGTTGAAAAGAAGATAGAGATAGGAGAGGGGACAGTGATTATGACAGTGGAACAGAGAAAGGGGCTGATATTCTTTAATGATAACCAGAAATTTCAAATGGGTGAACTTCTTAGAGCTTCTGCTGAGCCACTGGGTCATGGGATCTTGGGAAACAGTTATAAGGCTATGCTCAATGGTGGACCTACCATTGTCGTCAAAAGGCTAAGGGACTTGAAGCCATTTACAAAGGAGGAATTTGAGAAGATAGTGAATGCGATTGCTGATATGAAGCACCCCAATTTGTTGCCTTTGCTCGCTTACTACCATTCCAGAGATGAGAAGCTCATGCTTTACAGTTTTGCAGGGAATGGAAATCTTTTCTCCCGACTTCACGGTGATTTACATCAACTTGCTCCATTTTTTTAG 555 0.4108 MNISFIINVVLLLAIILLLLLYYNTYTRLNKIVKGQIHTVIEKEDDVEIGVEKKIEIGEGTVIMTVEQRKGLIFFNDNQKFQMGELLRASAEPLGHGILGNSYKAMLNGGPTIVVKRLRDLKPFTKEEFEKIVNAIADMKHPNLLPLLAYYHSRDEKLMLYSFAGNGNLFSRLHGDLHQLAPFF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00397 184 ProSiteProfiles Protein kinase domain profile. 88 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00397 184 SUPERFAMILY Protein kinase-like (PK-like) 92 176 IPR011009 -
Vimu2g00397 184 Gene3D Phosphorylase Kinase; domain 1 59 163 - -
Vimu2g00397 184 ProSiteProfiles PUA domain profile. 49 122 - -
Vimu2g00397 184 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 175 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00397 Vimu-Chr2 2252998 2253552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00397 52 176 Receptor kinase-like Gene Family AT2G36570 41.406 4.86e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu2g00397 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00397 - - vra:106774985 305.449