Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00396 ATGGAGGGTGGTATGCTTCTAACGTTGGTTTTGGTTGCTGCTGCTGTTGTGAACACAGTGCATGGGCATGGGACGCGTGTAGGGTTCTATTCCAGAACATGTCCGACAGCTGAATCCATTGTTACCTCCACGGTTGAGTCCCACGTTAGGTCTGACCCTACTTTGGCTGCTGCCATACTCAGGCTGCACTTCCATGATTGCTTTGTCCGAGGTTGTGATGCTTCTGTTCTCATTGCTGGCTCTGATACCGAGAGAACAGCACGCCCAAACCTTAATCTCAGAGGATACGAGGTTATTGACGATGCAAAGGAAAAGCTCGAAACTCTCTGCCCTGCTGTTGTGTCCTGTGCAGATATCCTTGCTCTTGCTGCTCGTGATTCTGTTGTTCTGAGTGGTGGAAGAAGTTGGAAAGTGCCAACAGGACGCAAAGATGGAAGAGTTTCAATCGGAAGCGAAGCCAGCAGTTTGCCTGGTCCTAACGATACTGTCTCAGTGCAGAAGACTAAGTTTTCTGATAAGGGTCTCAACACCTTAGACCTTGTCGTTCTCGTTGGTGGACATACAATAGGCACAGCAGCTTGCCAATCTTTTGCAGACAGAATATACAACCCTAATGCCACCACTGATCCTTCCATCGACCCTTCATTTCTTCCATTTCTGCGACAGATTTGCCCACAAAACCAACCGACGAAACGAGTGGCGCTGGACACTGATAGCCAATTCAAATTCGACACTTCATATTTTGCTCACCTGAAGAGAGGGCGTGGAGTTCTCCGTTCTGATCAAGCGCTTTGGACTGATCCTTCCACAAGACCCTTTGTTCAGAAATACTTAGCCACCGCTCCTTTCAACTACCAATTCGGCAAGTCTATGGTTAAGATGAGCAACATTGGTGTTAAACAGGGTGATGACGGTGAAATTCGCAACAAATGTTCTGCTATAAATTAA 948 0.4736 MEGGMLLTLVLVAAAVVNTVHGHGTRVGFYSRTCPTAESIVTSTVESHVRSDPTLAAAILRLHFHDCFVRGCDASVLIAGSDTERTARPNLNLRGYEVIDDAKEKLETLCPAVVSCADILALAARDSVVLSGGRSWKVPTGRKDGRVSIGSEASSLPGPNDTVSVQKTKFSDKGLNTLDLVVLVGGHTIGTAACQSFADRIYNPNATTDPSIDPSFLPFLRQICPQNQPTKRVALDTDSQFKFDTSYFAHLKRGRGVLRSDQALWTDPSTRPFVQKYLATAPFNYQFGKSMVKMSNIGVKQGDDGEIRNKCSAIN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00396 315 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 PRINTS Plant peroxidase signature 178 190 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 PRINTS Plant peroxidase signature 289 302 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 ProSitePatterns Peroxidases proximal heme-ligand signature. 179 189 IPR019793 -
Vimu2g00396 315 PRINTS Haem peroxidase superfamily signature 179 194 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 Pfam Peroxidase 42 278 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 SUPERFAMILY Heme-dependent peroxidases 26 315 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 ProSiteProfiles Plant heme peroxidase family profile. 24 315 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 CDD secretory_peroxidase 26 314 IPR033905 GO:0004601|GO:0042744
Vimu2g00396 315 PANTHER PEROXIDASE 25-RELATED 12 308 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00396 315 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Vimu2g00396 315 Gene3D - 28 315 - -
Vimu2g00396 315 Gene3D Peroxidase, domain 2 157 294 - -
Vimu2g00396 315 FunFam Peroxidase 157 294 - -
Vimu2g00396 315 FunFam Peroxidase 28 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00396 Vimu-Chr2 2248527 2250520 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00396 6 315 Peroxidase AT5G64120 58.696 1.69e-134 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00396 K00430 - gmx:100789249 503.442