Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00393 ATGGAGGGATGGAGTTTGTGCTCACTGATGTTTCTTTTGCTTGCTTTGGTCACTCTGAACGTTGTGCATGGCCAAGGGACGCGTGTGGGGTTCTATGCTAGAACATGTCCTCGGGCTGAGTCCATTGTTAGGTCCACAGTTCAATCCCACGTCAGGTCGGATCGTAGTTTGGCTGCTGGGCTGCTTCGGATGCACTTTCACGATTGCTTTGTGCAAGGTTGTGACGGTTCTGTTCTCATTGCCGGTGCTGGCACTGAGAGAACAGCATTTGCAAACCTTGGTTTAAGAGGATACGAGGTTATTGACGATGCGAAAACGCAGCTCGAGGCTGCATGCCCCGGTGTTGTGTCTTGTGCTGATATCCTTGCTCTTGCTGCTCGTGATTCCGTATTTCTGAGTGGTGGATTGAGTTGGCAAGTGCCTACTGGCCGCAGAGATGGGCGAATATCACAGGCTTCTGATGTGAGTAACTTGCCTGCTCCTTTTGACTCTGTTGATGTTCAGAAACAAAAGTTCACAGCAAAGGGACTCAACACTCAAGACCTCGTCACCCTTGTTGGTGGACATACGATTGGTACGACAGCTTGTCAGTTCTTCCGTAACAGATTGTACAACTTCACTGCAAATGGTGCTGACTCTACAATCAACCCTTTATTTCTTCCTCAGCTAAGAACATTGTGCCCGGAAAACGGCGGTGATTCAAACCGAGTAGCTCTTGATACCGGTAGTGAAAACAGATTTGACACGTCATTCTTTGCGAATTTGAGAAATGGGCGTGGAATTCTGCAGTCTGATCAAGCGCTTTGGAACGATCCTTCCACCAAGTCATTTGTACAGGGTTATTTGGCCTCCAAAGCCTCGTTTTTCAATGTGGAATTTGCAAAATCTATGGTGAAGATGAGCAACATCGAGTTGAAGACTGGGACCGATGGTGAAATTCGCAAGATATGTTCTGCCTTTAACTAG 966 0.4752 MEGWSLCSLMFLLLALVTLNVVHGQGTRVGFYARTCPRAESIVRSTVQSHVRSDRSLAAGLLRMHFHDCFVQGCDGSVLIAGAGTERTAFANLGLRGYEVIDDAKTQLEAACPGVVSCADILALAARDSVFLSGGLSWQVPTGRRDGRISQASDVSNLPAPFDSVDVQKQKFTAKGLNTQDLVTLVGGHTIGTTACQFFRNRLYNFTANGADSTINPLFLPQLRTLCPENGGDSNRVALDTGSENRFDTSFFANLRNGRGILQSDQALWNDPSTKSFVQGYLASKASFFNVEFAKSMVKMSNIELKTGTDGEIRKICSAFN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00393 321 Gene3D Peroxidase, domain 2 159 300 - -
Vimu2g00393 321 ProSiteProfiles Plant heme peroxidase family profile. 26 321 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 Gene3D - 30 321 - -
Vimu2g00393 321 CDD secretory_peroxidase 28 320 IPR033905 GO:0004601|GO:0042744
Vimu2g00393 321 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Vimu2g00393 321 PANTHER PEROXIDASE 25-RELATED 14 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 Pfam Peroxidase 43 283 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 SUPERFAMILY Heme-dependent peroxidases 28 321 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu2g00393 321 FunFam Peroxidase 30 171 - -
Vimu2g00393 321 FunFam Peroxidase 159 300 - -
Vimu2g00393 321 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00393 Vimu-Chr2 2236591 2238044 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00393 5 321 Peroxidase AT5G64120 64.110 3.23e-148 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00393 K00430 - gmx:100783523 547.74