Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00391 ATGGCAGCTGCAACATCTGGTGCTGTGTTAAATGGGTTGGGATCTTCCTTCTTGAGTGGAGGAAGCAGGAGCCAAACCCTTCTGGCCACTTCTATTGGAGGCAAAGTCGGTGTTGCAGTTAGTCCTAGAAGACTCATTGTGGTAGCTGCGGCAGCACCAAAGAAGTCATGGCTCCCTGGTGTTAGAGGTGGTGGCAATCTCGTCGACCCAGAATGGCTTGATGGATCGCTGCCAGGTGACTTTGGTTTTGACCCACTGGGCCTGGGGAAGGACCCGGCATTCCTGAAATGGTACAGAGAAGCTGAGCTGATTCATGGGAGGTGGGCAATGGCTGCAGTTTTAGGTATCTTTGTAGGGCAGGCCTGGAGTGGAGTGCCATGGTTTGAGGCTGGAGCTGACCCTAATGCAATTGCTCCTTTTTCCTTTGGTTCTCTTTTGGGAACCCAGTTGATTCTTATGGGATGGGTTGAGAGCAAGAGATGGGTGGATTTCTTCAACCCAGACTCACAGTCAGTGGAATGGGCCACTCCATGGTCAAAAACTGCTGAGAACTTTGCCAATGCTACTGGTGAACAAGGGTACCCAGGAGGCAAATTCTTTGACCCTTTGGGCTTCGCTGGTACTCTCAAGGATGGAGTTTACATCCCGGATACAGAGAAGCTGGAAAGATTGAAATTAGCTGAGATTAAGCATGCCAGGATTGCTATGTTGGCCATGCTGATTTTCTACTTTGAGGCTGGACAAGGAAAGACCCCACTAGGCGCACTTGGCTTGTAA 777 0.5032 MAAATSGAVLNGLGSSFLSGGSRSQTLLATSIGGKVGVAVSPRRLIVVAAAAPKKSWLPGVRGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00391 258 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 54 256 IPR001344 GO:0009765|GO:0016020
Vimu2g00391 258 Gene3D Chlorophyll a/b binding protein domain 70 257 - -
Vimu2g00391 258 Pfam Chlorophyll A-B binding protein 70 246 IPR022796 -
Vimu2g00391 258 SUPERFAMILY Chlorophyll a-b binding protein 67 258 - -
Vimu2g00391 258 FunFam Chlorophyll a-b binding protein, chloroplastic 70 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00391 Vimu-Chr2 2230591 2231651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00391 1 258 Chloroplast and Mitochondria Gene Families AT1G15820 82.308 1.57e-153 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00391 K08917 - gmx:100527463 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00391 2 2230591 2231651 Vimu2g00391 2 2230591 2231651 ECH
Vimu11g01298 11 14380524 14381132 Vimu2g00391 2 2230591 2231651 PCT