Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00388 ATGGATGTTCTAACAATAGCCTCAACTCTCACCATTTCCAAACCCTTTCAAACGCTCTCACTCCCAAAGATACACCACACACCACCTCCTCTTCCCACGCGCTTCTCGGTTTCATGTAGAGCCACCAAGCAGCAGCTTCGAGGTGTGGAAGACAACCTGTACAAGATTCTAAGTTTGAGTCCGAACAGCGCCACCACCGACGACATAAAGAAAGCGTACAGATCAATGGCTCGCCAGTACCACCCCGATGTGTGCCATGATAGTTCAAGGAAAGAGGAGTTGACGAGGATGTTTGTGGAACTGAACGCGGCTTACACCACCTTGTCCAATCCAAGGCTTCGAGCAGAGTATGACTACAAACTGGGTTTGAGAAGCAGAACGGGCGTTGGTGACGAGAGTTGGAGAATGAGATGGATGGAGCAACTGGCCGAGTTGAAGAGAAGATCTCACAAGCGTATGCAACGAAATCATGGATCGTGGGGCAGCAGAGTCAGAGCACAAACCGTGAACTCAAATTAG 519 0.4971 MDVLTIASTLTISKPFQTLSLPKIHHTPPPLPTRFSVSCRATKQQLRGVEDNLYKILSLSPNSATTDDIKKAYRSMARQYHPDVCHDSSRKEELTRMFVELNAAYTTLSNPRLRAEYDYKLGLRSRTGVGDESWRMRWMEQLAELKRRSHKRMQRNHGSWGSRVRAQTVNSN 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00388 172 SMART dnaj_3 51 113 IPR001623 -
Vimu2g00388 172 Pfam DnaJ domain 52 118 IPR001623 -
Vimu2g00388 172 MobiDBLite consensus disorder prediction 149 172 - -
Vimu2g00388 172 ProSiteProfiles dnaJ domain profile. 52 121 IPR001623 -
Vimu2g00388 172 SUPERFAMILY Chaperone J-domain 47 117 IPR036869 -
Vimu2g00388 172 CDD DnaJ 52 110 IPR001623 -
Vimu2g00388 172 PRINTS DnaJ domain signature 55 73 IPR001623 -
Vimu2g00388 172 PRINTS DnaJ domain signature 73 88 IPR001623 -
Vimu2g00388 172 PRINTS DnaJ domain signature 93 113 IPR001623 -
Vimu2g00388 172 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 38 169 - -
Vimu2g00388 172 Gene3D DnaJ domain 38 142 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00388 Vimu-Chr2 2215022 2215540 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00388 54 118 C2H2 Transcription Factor Family AT1G74250 40.299 2.27e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00388 - - gmx:100783590 227.639