Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00387 ATGGATGTTCTCAGATTCAACTCAAACCTTAGCACCACTCACATGCTTCCACTCTCAAAGAAACATCAAACACAACCTCCTCGTATAAAGTTTTCTGTTTCATGCAGAGCCACGAAACAGCAGGCATGTGTGGAGGAGAACTTGTACAAGGTACTGAGTTTGAGTCCCATGAATGCAACCACAGATGACATAAAGAAAGCGTACAGATCAATGGCTCTTCAGTACCACCCCGACGTGTGCCATGACGGTTCCAAGAAAGAAGAGTTGACGAGGATGTTTGTGCAGCTCAACGCCGCCTACACCACCTTGTCCAATCCACAGCTTCGAGCGGATTATGATTATGAGTTGGGTTTGAGAAGCAAGAAAAGTGTGGGTGATGAGAGTTGGAGATGTACGTGGCAGGATCAGGTGGCTGAGTTGAAGAGAAGGTCTCACACGCGCATGGCACAAAGGAACGGATCCTGGGGCTCTAGAGTCAGAGCACGAAACATGAACTGA 498 0.4779 MDVLRFNSNLSTTHMLPLSKKHQTQPPRIKFSVSCRATKQQACVEENLYKVLSLSPMNATTDDIKKAYRSMALQYHPDVCHDGSKKEELTRMFVQLNAAYTTLSNPQLRADYDYELGLRSKKSVGDESWRCTWQDQVAELKRRSHTRMAQRNGSWGSRVRARNMN 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00387 165 SMART dnaj_3 46 108 IPR001623 -
Vimu2g00387 165 CDD DnaJ 47 105 IPR001623 -
Vimu2g00387 165 SUPERFAMILY Chaperone J-domain 40 112 IPR036869 -
Vimu2g00387 165 Gene3D DnaJ domain 33 144 IPR036869 -
Vimu2g00387 165 MobiDBLite consensus disorder prediction 145 165 - -
Vimu2g00387 165 ProSiteProfiles dnaJ domain profile. 47 116 IPR001623 -
Vimu2g00387 165 Pfam DnaJ domain 47 113 IPR001623 -
Vimu2g00387 165 PRINTS DnaJ domain signature 50 68 IPR001623 -
Vimu2g00387 165 PRINTS DnaJ domain signature 88 108 IPR001623 -
Vimu2g00387 165 PRINTS DnaJ domain signature 68 83 IPR001623 -
Vimu2g00387 165 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 29 164 - -
Vimu2g00387 165 MobiDBLite consensus disorder prediction 149 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00387 Vimu-Chr2 2211090 2211587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00387 49 113 C2H2 Transcription Factor Family AT1G74250 41.791 2.56e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00387 - - vum:124830030 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00387 2 2211090 2211587 Vimu2g00387 2 2211090 2211587 ECH
Vimu11g01300 11 14420400 14422277 Vimu2g00387 2 2211090 2211587 PCT