Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00381 ATGTCTTTGACAAATGTTTCTTCTCTGCAAGTTCTTGATCTCTCGAACAACCGTCTAACAGGGAATATCCCAGTGAATGGTTCATTTTCATTGTTTACCCCCATCAGTTATCAAAATAATCCTGGCTTGATACAGCCAAAAAACGCTCCATCTCCGGCTTCTCCAACTCCACCACCGGCTTCTTCAGGAAATAGTAACACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGGCGAAGAAGGAAACCTCAGGATCATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAACTTAAAAGGTTTTCGCTACGTGAGCTGCAAGTTGCCACTGATAACTTTAGTAACAAACACATTCTGGGTAGAGGTGGATTCGGAAAGGTTTATAAAGGACGCTTAGCTGATGGATCTCTTGTGGCAGTGAAAAGGCTTAAAGAGGAACGTACGCAGGGTGGGGAGCTCCAATTTCAAACTGAAGTGGAAATGATCAGCATGGCTGTGCATCGTAATTTGCTTCGGCTTCGTGGTTTCTGTATGACACCTACTGAACGATTGCTTGTGTATCCTTTCATGGCTAATGGAAGTGTAGCATCATGTTTACGAGGCAGCAACTTAAACAAATTTCTTAATAGCTCAAAATTTCAAATACAGATGAATGCTGTTTATGTTGAATTCCTGCATGTGCAGTTTTATACTGAAACTGATTTTGTGTATGTTGATCTTGTTGTTGAAGAACGTCAAGAGTCTCAACCACCACTTGGCTGGCCAGAACGGAAGCGTATTGCTCTGGGTTCTGCAAGGGGGCTTGCTTATTTACATGATCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCAGCAAATATTTTGTTGGATGAAGAATTTGAAGCAGTTGTTGGAGATTTTGGTCTAGCAAAACTTATGGATTATAAAGATACTCACGTTACTACTGCTGTACGTGGAACAATTGGACATATAGCGCCTGAGTACCTTTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTCATAACTGGACAAAGGGCTTTTGATCTAGCTCGACTTGCCAATGATGACGATGTCATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTGGTAGATGCAGATTTACAGGGCAATTATATTGATGAGGAGGGCTCTCCTATGGAAAGACCAAAGATGTCTGAAGTGGTCAGAATGCTAGAAGGTGATGGTTTGGCTGAGAAATGGGAGCAATGGCAGAAAGACGAGACCTTCCGGCAAGACTTCAACAACAACATTCATCCCCCTAATGCAAATTGGATAGTAGATTCAACTTCCCACATCCAACCAGATGAACTGTCAGGTCCTAGATGA 1461 0.4257 MSLTNVSSLQVLDLSNNRLTGNIPVNGSFSLFTPISYQNNPGLIQPKNAPSPASPTPPPASSGNSNTGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMANGSVASCLRGSNLNKFLNSSKFQIQMNAVYVEFLHVQFYTETDFVYVDLVVEERQESQPPLGWPERKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDRKLETLVDADLQGNYIDEEGSPMERPKMSEVVRMLEGDGLAEKWEQWQKDETFRQDFNNNIHPPNANWIVDSTSHIQPDELSGPR 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00381 486 FunFam Somatic embryogenesis receptor kinase 1 101 208 - -
Vimu2g00381 486 FunFam Somatic embryogenesis receptor-like kinase 1 253 456 - -
Vimu2g00381 486 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 447 - -
Vimu2g00381 486 ProSitePatterns Protein kinases ATP-binding region signature. 138 160 IPR017441 GO:0005524
Vimu2g00381 486 Gene3D Ribonuclease Inhibitor 1 53 IPR032675 -
Vimu2g00381 486 Pfam Protein tyrosine and serine/threonine kinase 135 378 IPR001245 GO:0004672|GO:0006468
Vimu2g00381 486 Gene3D Transferase(Phosphotransferase) domain 1 257 456 - -
Vimu2g00381 486 MobiDBLite consensus disorder prediction 42 66 - -
Vimu2g00381 486 Gene3D Phosphorylase Kinase; domain 1 101 208 - -
Vimu2g00381 486 ProSiteProfiles Leucine-rich repeat profile. 8 30 IPR001611 GO:0005515
Vimu2g00381 486 ProSiteProfiles Protein kinase domain profile. 132 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00381 486 SMART serkin_6 132 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00381 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672|GO:0006468
Vimu2g00381 486 SUPERFAMILY Protein kinase-like (PK-like) 111 437 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00381 Vimu-Chr2 2166366 2169436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00381 2 486 Receptor kinase-like Gene Family AT4G33430 76.400 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vimu2g00381 Pkinase 3.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00381 K13416 - gmx:100800522 791.956