Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00374 ATGTTTATATTAGATGATGATGAAGAAGTTGGAGACACTGAGACTCTTGAAATAAGAATGGAACCTTCGGAAATCGAAGTTTGTGTTATCAACAAAGCTATGATAATCTTGCCTCCTGGTAAATGCTTTCGTGAGGATCAAAGGAAGGAATCTCAGTCTGATTGTTGCATTTGCTTGGAAAAGTTTAAGAATGGAGACTTCGTTCAACCATTTGGAGTGTGTATTCATGAATTTCATTTCGTATGTATTAACTCTTGGGTGGACAATGGAAACATTTCATGTCCACTTTGCCGTCAGAAGTTGTCAATTCTTGCTTAA 318 0.3679 MFILDDDEEVGDTETLEIRMEPSEIEVCVINKAMIILPPGKCFREDQRKESQSDCCICLEKFKNGDFVQPFGVCIHEFHFVCINSWVDNGNISCPLCRQKLSILA 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00374 105 Pfam Ring finger domain 54 98 IPR001841 -
Vimu2g00374 105 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 43 101 - -
Vimu2g00374 105 SMART ring_2 55 97 IPR001841 -
Vimu2g00374 105 ProSiteProfiles Zinc finger RING-type profile. 55 98 IPR001841 -
Vimu2g00374 105 SUPERFAMILY RING/U-box 54 103 - -
Vimu2g00374 105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 103 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00374 Vimu-Chr2 2119308 2119625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00374 54 101 C3H Transcription Factor Family AT3G18930 41.667 6.15e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00374 - K16281 vun:114188632 139.428