Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00372 ATGGCAGATACCAATGTCAACCTTCCACCAGGCTTTCGATTCTATCCCACAGATGAAGAGCTCATAGTCCATTTCCTTCACAGAAAAGCCTCACTTTTGCCTTGCCACCCGGATGTCATCCCTGATCTTGAGCTCTACCAATATGATCCATGGGAGCTTCATGGTAGAGCTTTGGCGGAGGGAAATCAATGGTACTACTACAGCAGAAGGACGCAGAATAGAGTCACTGGCAATGGGTATTGGAAACCAACGGGAATGGAAGAGCCAGTGGTTTCAAGCTCAAACAGCAAGAGAGTTGGAGAAGATGCTACTGCTATCAAAACCAATTGGATAATGCAAGAATATCGGCTATCAGATTCTGCTTCCTCTACCAGATCATCCAAAAGAAAACCTCAACCAAAATCAGATTACAATAAATGGGTGATATGTCGTGTTTATGAGCGTAATGGAGAGGAGGACAATGGAACAGAGCTCTCATGTTTGGATGAAGTATTCTTGTCATTGGATGATGATCTTGATGAAATAAGCTTACCAAATTAG 540 0.4315 MADTNVNLPPGFRFYPTDEELIVHFLHRKASLLPCHPDVIPDLELYQYDPWELHGRALAEGNQWYYYSRRTQNRVTGNGYWKPTGMEEPVVSSSNSKRVGEDATAIKTNWIMQEYRLSDSASSTRSSKRKPQPKSDYNKWVICRVYERNGEEDNGTELSCLDEVFLSLDDDLDEISLPN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00372 179 Pfam No apical meristem (NAM) protein 9 117 IPR003441 GO:0003677|GO:0006355
Vimu2g00372 179 PANTHER NAC TRANSCRIPTION FACTOR 56 8 154 - -
Vimu2g00372 179 Gene3D NAC domain 17 152 IPR036093 GO:0003677|GO:0006355
Vimu2g00372 179 ProSiteProfiles NAC domain profile. 8 148 IPR003441 GO:0003677|GO:0006355
Vimu2g00372 179 SUPERFAMILY NAC domain 5 147 IPR036093 GO:0003677|GO:0006355
Vimu2g00372 179 FunFam NAC domain-containing protein 104 17 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00372 Vimu-Chr2 2101674 2102804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00372 1 163 NAC Transcription Factor Family AT1G61110 37.500 4.50e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu2g00372 NAM 5.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00372 - - gmx:100793989 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01316 11 14595766 14597577 Vimu2g00372 2 2101674 2102804 PCT