Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00370 ATGTATATTCTAAAAGGAGTGTATAAGGGGCAGGGCGTTATCAGTCGTGGCCTTGTTTTCGCGGCGCACATCAGAACCCTACTTCCTCAGAGTCCGGTCGCACGCGCCGTCACGATGTGCTCGTCTTATTGTCGCCGTGAACAGGTAAACGTTCCAAAAACGAAGAAGACTTACTGCAAGAGTAAGGAGTGCAGGAAGCACACTCTGCACAAGGTTACCCAATACAAGAAGGGTAAGGATAGCATCGCTGCTCAGGGGAAACGCCGTTACGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCTGTTTTCCACAAGAAGGCCAAGACCACCAAGAAGATTGTCTTGAGGTTGCAATGTCAGGGTTGCAAGCATGTCTCCCAACACCCAATTAAGAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACTTCTCTTTTCTAG 459 0.4902 MYILKGVYKGQGVISRGLVFAAHIRTLLPQSPVARAVTMCSSYCRREQVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00370 152 Pfam Ribosomal protein L44 66 141 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vimu2g00370 152 Gene3D - 48 152 - -
Vimu2g00370 152 SUPERFAMILY Zn-binding ribosomal proteins 49 141 IPR011332 GO:0006412
Vimu2g00370 152 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 49 152 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vimu2g00370 152 MobiDBLite consensus disorder prediction 78 95 - -
Vimu2g00370 152 FunFam 60S ribosomal protein L44 48 152 - -
Vimu2g00370 152 MobiDBLite consensus disorder prediction 78 103 - -
Vimu2g00370 152 ProSitePatterns Ribosomal protein L44e signature. 110 121 IPR000552 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00370 Vimu-Chr2 2082025 2083012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00370 49 152 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 92.308 8.29e-67 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00370 K02929 - ming:122079564 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01319 11 14604634 14605963 Vimu2g00370 2 2082025 2083012 PCT