Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00367 ATGAAGAATGTCTGCAATGTGGTGCAGGCCATGAAACCCACCCTGCTAATGCTGGTGGTGCAAGTAGCATTTGCCGGTGTTAATATCTTCTACAAGCTTGCCGTCAACGATGGCATGAACTTGAAGGTCATTGTTGCCTACCGTTTTCTATTTGCCACCACTTTCATTGCTCCGGTTGCTGTCATTCTTGAAAGGAAGAAGAGGACAAAGATGAATTGGACCATACTGTTTCAGTCATTTCTTTGCGGTTTATTTGGGGGATCTTTAGCTCAGAATTTCTACTTGCAAGCTCTGTCCTTAACATCTGCAACATTTGCATCTGCAATGGCTAATCTTGTACCAGGCATAACCTTTATCATGGCCGTTTGCTTTGGTTTGGAAAGATTGAATTTGAGAACAACATCAGGAAAGGCCAAAATAATGGGTACCTTAATTGGAATTGGTGGAGCAATGGTTCTTACATTCGTTAAAGGTAAAGATATTGAGATAGGGACGTTTCACTTTAACCTTTTGCCTGAGAAGGGTGCACACCCACAGGTGAAGGCTACCGCCGGCGGTGCCAAGACCGTCATGGGTGCTTTGTGCGCTCTGGCTAGTGGAGTCAGTTATGCGTTCTGGCTCATCATTCAGGCGAAAATGAGTGAAAGATACCCTCATCCCTACTCTAGCACAGCGTTGATGTCACTGTGGGGAGCATTAGTGTCTATCATGTTTGCACTTTTCGTTGAGAGGGACTGGAATCAGTGGAGGTTGGGTTGGAATATTAGGCTTTGGACTGCAGCATATGCGGTATTAATAGTTGGTATTGTGGTTTCTGGGATTATGGTGGTTGTGATTTCATGGTGCATCCGAATGAGAGGCCCATTATTTGCCTCTGTTTTTAACCCTCTGATGCTTGTGATAGTCGCCTTGGCTGGTTCTACCATGTTGAAGGAGAAGCTACACCTTGGATGCATTATTGGAGCAGTGCTGATTGTGTGTGGCTTATACATGGTTTTATGGGGTAAAAGTAAAGAGATGAAGAGAAATAATCAATTGGTGCCAGCACATAACACCCATGAGGATGAGTTTGATAGGGTGGAAGTAGTAGTTAGGGATGAAGTAGAAGATAAAAGCAACCAAAAGGAAAGAGATAAAAATGGTGAAAAAGTAAGTGGGGATTACCACGAAGATCGAAAGCTAGAGCAGAATTCACATGTACCAAGTCAGAGTAACCAGGGAAGAGATGATGAAAATTCTAATAATACTGTTTTCTGTACTTAA 1263 0.4315 MKNVCNVVQAMKPTLLMLVVQVAFAGVNIFYKLAVNDGMNLKVIVAYRFLFATTFIAPVAVILERKKRTKMNWTILFQSFLCGLFGGSLAQNFYLQALSLTSATFASAMANLVPGITFIMAVCFGLERLNLRTTSGKAKIMGTLIGIGGAMVLTFVKGKDIEIGTFHFNLLPEKGAHPQVKATAGGAKTVMGALCALASGVSYAFWLIIQAKMSERYPHPYSSTALMSLWGALVSIMFALFVERDWNQWRLGWNIRLWTAAYAVLIVGIVVSGIMVVVISWCIRMRGPLFASVFNPLMLVIVALAGSTMLKEKLHLGCIIGAVLIVCGLYMVLWGKSKEMKRNNQLVPAHNTHEDEFDRVEVVVRDEVEDKSNQKERDKNGEKVSGDYHEDRKLEQNSHVPSQSNQGRDDENSNNTVFCT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00367 420 SUPERFAMILY Multidrug resistance efflux transporter EmrE 238 338 - -
Vimu2g00367 420 MobiDBLite consensus disorder prediction 398 420 - -
Vimu2g00367 420 MobiDBLite consensus disorder prediction 368 397 - -
Vimu2g00367 420 PANTHER WAT1-RELATED PROTEIN 12 345 IPR030184 GO:0016020|GO:0022857
Vimu2g00367 420 Pfam EamA-like transporter family 191 333 IPR000620 GO:0016020
Vimu2g00367 420 Pfam EamA-like transporter family 12 154 IPR000620 GO:0016020
Vimu2g00367 420 MobiDBLite consensus disorder prediction 368 420 - -
Vimu2g00367 420 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00367 Vimu-Chr2 2068668 2072509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00367 11 378 Nodulin-like Gene Family AT1G25270 42.391 3.74e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00367 - - vra:106774988 726.087