Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00364 ATGGTCAAGGCTGGTTTTGCAGGTGATGATGCTCCCAGGGCTGTGTTCCCCAGTATTATTGGTCGACCGCGCCACACTGGTGTAATGGTTGGGATGGGTCAGAAGGATGCCTACGTGGGTGATGAAGCCCAATCAAAAAGGGGTATACTCACCTTGAAGTATCCTATAGAGCATGGCATAGTCAGCAACTGGGATGATATGGAGAAGATTTGGCATCACACATTTTACAACGAGCTTCGAGTTGCCCCTGAAGAACACCCCGTGCTTCTTACTGAGGCACCACTCAATCCCAAGGCGAACCGAGAGAAGATGACCCAAATTATGTTTGAGACCTTTAATGTGCCTGCTATGTATGTGGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACAACAGGTTTGTTTCTGTGA 417 0.4844 MVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGLFL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00364 138 CDD NBD_sugar-kinase_HSP70_actin 59 133 - -
Vimu2g00364 138 SUPERFAMILY Actin-like ATPase domain 2 136 IPR043129 -
Vimu2g00364 138 Gene3D - 1 134 - -
Vimu2g00364 138 SMART actin_3 1 138 IPR004000 -
Vimu2g00364 138 Gene3D Actin; Chain A, domain 2 19 56 - -
Vimu2g00364 138 ProSitePatterns Actins signature 1. 38 48 IPR004001 -
Vimu2g00364 138 FunFam Actin, alpha skeletal muscle 1 134 - -
Vimu2g00364 138 FunFam Actin, alpha skeletal muscle 19 56 - -
Vimu2g00364 138 ProSitePatterns Actins and actin-related proteins signature. 89 101 IPR020902 -
Vimu2g00364 138 PANTHER ACTIN 5 137 IPR004000 -
Vimu2g00364 138 PRINTS Actin signature 11 20 IPR004000 -
Vimu2g00364 138 PRINTS Actin signature 34 45 IPR004000 -
Vimu2g00364 138 PRINTS Actin signature 125 138 IPR004000 -
Vimu2g00364 138 PRINTS Actin signature 46 68 IPR004000 -
Vimu2g00364 138 PRINTS Actin signature 100 113 IPR004000 -
Vimu2g00364 138 Pfam Actin 2 137 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00364 Vimu-Chr2 2060179 2060720 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00364 1 138 Cytoskeleton Gene Families AT5G09810 97.826 2.08e-99 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00364 K10355 - gmx:100797704 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00364 2 2060179 2060720 Vimu2g00364 2 2060179 2060720 ECH