Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00353 ATGAAGGGAGTGATGAATGCAATGCATGGGTTGAAACCAGTGTTGTTGATGGTGTTAGTGCAAATTGCATACACTGCTGTCAATGTGCTTTTCAAACTCGCCATAAACGACGGAATGAGTGTAAAAGTTGCCACAACGTATCGTCTCGCTTTTGGATCTGCTTTCACTGTTCCTCTCGCTCTCATTTCTGAAAGGCAACAGATCAACTTAGCTGCGGCTGATATGGAAGAAAAGACCAAAGATGACTTGGAGGGTGCTTTTCATGGCATTTCTTTGTGGATTATTCGGAATCTTTTCTACGAGTCATTGGCTTTAACATCAGCAACGTTTGCCTCCGCTCTCTACAATCTCATTCCAGCTATCACCTTTGTATTGGCCATTTCCTGCGGGGCAGCCGCAGGAAGGGCCAAGGTGTTGGGAACTATAATTGGGATTGGTGGGGCAATGGTGTTGACTTTTATCAAAGGTGCAGAAATTAATATCTGGCCCTTCCACATCAGCCTAATGCATCCACGTCAGCACCAAGACAGCCACGTGGCACAGTTAAATTCTGACTCTAGCAATACATTGTTGGGGGCTCTTTGTTCCATATTAAGCTGCTTCTCTTTTTCTCTCTGGCTCACCATTCAGGCTAAGATGAGCAAAGAATACCCTTGTCACTATTCAAGCACGGCTCTGATGTCTACAGCAGGAGCAATACAGGCCGCTGCTTTTGGTTTCTGTGTTGAGAGAGATTTCAGCCAATGGAAGTTGGGTTGGAATATCAGGCTACTTGCTGTGGCTTATTCGGGAATCGTAGCCTCTGGAATAGTAGTTATTATTACTGCATGGTGCATACAAATGAGAGGGCCTCTTTTTGCGTCTGTTTTCAACCCCCTAATGCTTGTGCTTGTGGCTATTGCTGGTTCTTTGATGCTGAACGAGAATTTGTATGTAGGAAGTGTGGTTGGAGCAGTGCTGATTGTGTGTGGGTTGTATATGGTTCTGTGGGGTAAAAGTAAAGAGATGAAGAACATCACTCAGTTAGTGCCATCGGAGACCATCCGAGAAGCTGAAGCCGTAGAAGTTGTTGTCGTGTCCACCCCAATGGATCATGATAAATGTGACCACGACAACCGAAGCGAAATCACTGCTATTACAAGGAATCTTGACAAAGATTGTGAGGATTTGACAAAAAAATAA 1182 0.4459 MKGVMNAMHGLKPVLLMVLVQIAYTAVNVLFKLAINDGMSVKVATTYRLAFGSAFTVPLALISERQQINLAAADMEEKTKDDLEGAFHGISLWIIRNLFYESLALTSATFASALYNLIPAITFVLAISCGAAAGRAKVLGTIIGIGGAMVLTFIKGAEINIWPFHISLMHPRQHQDSHVAQLNSDSSNTLLGALCSILSCFSFSLWLTIQAKMSKEYPCHYSSTALMSTAGAIQAAAFGFCVERDFSQWKLGWNIRLLAVAYSGIVASGIVVIITAWCIQMRGPLFASVFNPLMLVLVAIAGSLMLNENLYVGSVVGAVLIVCGLYMVLWGKSKEMKNITQLVPSETIREAEAVEVVVVSTPMDHDKCDHDNRSEITAITRNLDKDCEDLTKK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00353 393 Pfam EamA-like transporter family 191 329 IPR000620 GO:0016020
Vimu2g00353 393 Pfam EamA-like transporter family 12 152 IPR000620 GO:0016020
Vimu2g00353 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 334 - -
Vimu2g00353 393 PANTHER WAT1-RELATED PROTEIN 12 341 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00353 Vimu-Chr2 1986406 1988311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00353 1 339 Nodulin-like Gene Family AT1G68170 40.571 1.60e-80 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00353 - - gmx:100798755 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00353 2 1986406 1988311 Vimu2g00353 2 1986406 1988311 ECH
Vimu2g00353 2 1986406 1988311 Vimu11g01357 11 15184283 15191918 PCT