Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00351 ATGTCATTCCGTAGCATAGTTCGTGATGTGAGGGATAGTTTTGGGAGCTTGTCTAGGCGTAGTTTTGATGTCAGACTTACGGGTCATCATAGAGGAAAATCTCAAGGATCGGTGCAGGATTTGCATGATCAACCTCTAGTGATTCAAAATAGCCGCTGGGCAAGTTTACCCCCAGAATTGCTATTTGATATCATTAGACGGCTAGAGGAGAGTGAGAATACATGGCCTTCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGCCAGTCTTGGAGGAACATGTGCAAAGAAATTGTTAAGAGCCCAGAGTTATGCGGCAAACTTACATTCCCCGTGTCCTTGAAACAGCCTGGACCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTGTGTCTCAGCCCTGATCTTTGCATGAGTGTATGGTTTGAGATCTGCATGAGATGGAACTTACAATACTGTAATTTAATACTTGAAGCAAGTACTGCGATAATTTTGGGAATGGGGTTTATAGCTTTGTTGGTTGAAAATGGGAAATTCCTTCTTTCTGCTAAGAGGACTAGGAGAACAACTTACACTGAGTATGTTATTTCCATGGATGCTGACAACATATCTAGATCAAGTAACACTTACATCGGAAAGCTGAGATCAAATTTTCTTGGTACCAAGTTCATTATATATGATACGCAGCCTCCATACTCTTCAGCTCATATATGCCCTCCTGGAACTGGGAAGACGAGCCGCAGATTTTATTCGAAAAAAGTGTCACCGAAAGTTCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAATTAAATGTGCTCGGGACTAGAGGCCCCAGAAAGATGCACTGTGTCATGCACTCCATACCAGCTTCAGCACTCGATGCAGGCGGCACCGTTCCTGGCCAGCCAGAGCTTCTTCCCCGTTCCCTGGAGGACTCGTTTCGGAGCATCTCGTTTTCGAAGTCGCTCGATCGCTCGATCGAGTTCAGTAGTTCACGGTTTTCTGATATTGGGGAATCCATTCTGGAGGACGATGATGGGAAGCTGAGACCCTTGGTTCTGAAAAACAAGCCTCCGAGGTGGCACGAACAGTTACAATGTTGGTGCCTTAATTTTCGTGGCCGAGTAACTGTTGCGTCTGTTAAAAACTTTCAGTTGATTGCTGCCACCCAACCTGCTGCCGGTGCACCTACACCCTCTCAACCGGCTCCACCGGAACATGACAAGATCATTCTTCAGTTTGGCAAAGTTGGGAAAGACATGTTCACGATGGATTATCGGTACCCTTTATCTGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAACTGGCTTGTGAATAA 1392 0.4468 MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSQGSVQDLHDQPLVIQNSRWASLPPELLFDIIRRLEESENTWPSRKHVVACAAVCQSWRNMCKEIVKSPELCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPDLCMSVWFEICMRWNLQYCNLILEASTAIILGMGFIALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCVMHSIPASALDAGGTVPGQPELLPRSLEDSFRSISFSKSLDRSIEFSSSRFSDIGESILEDDDGKLRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00351 463 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515
Vimu2g00351 463 FunFam Tubby-like F-box protein 48 101 - -
Vimu2g00351 463 Pfam F-box domain 53 100 IPR001810 GO:0005515
Vimu2g00351 463 ProSitePatterns Tub family signature 1. 385 398 IPR018066 -
Vimu2g00351 463 SUPERFAMILY Tubby C-terminal domain-like 102 147 IPR025659 -
Vimu2g00351 463 Gene3D Tubby Protein; Chain A 112 457 IPR025659 -
Vimu2g00351 463 SUPERFAMILY Tubby C-terminal domain-like 186 463 IPR025659 -
Vimu2g00351 463 Pfam Tub family 185 458 IPR000007 -
Vimu2g00351 463 Pfam Tub family 114 145 IPR000007 -
Vimu2g00351 463 PRINTS Tubby superfamily signature 221 245 IPR000007 -
Vimu2g00351 463 PRINTS Tubby superfamily signature 420 439 IPR000007 -
Vimu2g00351 463 PRINTS Tubby superfamily signature 441 463 IPR000007 -
Vimu2g00351 463 PRINTS Tubby superfamily signature 273 300 IPR000007 -
Vimu2g00351 463 PRINTS Tubby superfamily signature 205 221 IPR000007 -
Vimu2g00351 463 PRINTS Tubby superfamily signature 367 384 IPR000007 -
Vimu2g00351 463 PRINTS Tubby superfamily signature 385 401 IPR000007 -
Vimu2g00351 463 PANTHER TUBBY-RELATED 29 461 - -
Vimu2g00351 463 CDD F-box_AtTLP-like 53 97 - -
Vimu2g00351 463 Gene3D - 48 104 - -
Vimu2g00351 463 ProSitePatterns Tub family signature 2. 448 463 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00351 Vimu-Chr2 1975042 1976965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00351 1 463 TUB Transcription Factor Family AT1G76900 65.600 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vimu2g00351 Tub 9.1e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00351 K19600 - gmx:100814578 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00351 2 1975042 1976965 Vimu2g00351 2 1975042 1976965 ECH