Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00347 ATGGCATCGTCGAAGGTGGTGGTCACGACGAATCCCGATGTGGCGCCGCAGAGTTCGATTTCGAGCCAGGTATGGGACGAGGTGGTTGGGGGTGCTGAGTCTCAGGACATGGCAATCAGCCTCCACGATTTGTTGTTGACCTCCGTTGCCAGAAACGACGTCGTTCCGCCCTCTCACGGGGGAAGGGGAAAGAGAAAGGCTGTGGAGGAAGCCGTCGTGGATAGGGCTACTCTTCAGAAACAGAGAAGGATGATAAAAAACAGAGAATCTGCCGCTAGGTCCAGGGAACGCAAGCAGGCTTATACAGTTGAGTTAGAGTCTTTGGTTACACTTCTCGAGGAAGAGAATGCTCGATTGTTAAAGGAAGAGGCTGAAAGGAGAAGGCAGAGGTTCAATCAGTTGTCCACTAATCCTTGGAAAGCTATTCTTGGAACTCTTAGACCTGCTACATACAGTGCATCACTTCAATACCTAGATTTACATCTCTTGCTCATGGAGTGCCTTATTCCAGTTGAGGAGAAGAGCAAACCAAGACGAATGCTTCGGCGAGTGAATTCAGCCCAATGGTGA 570 0.5 MASSKVVVTTNPDVAPQSSISSQVWDEVVGGAESQDMAISLHDLLLTSVARNDVVPPSHGGRGKRKAVEEAVVDRATLQKQRRMIKNRESAARSRERKQAYTVELESLVTLLEEENARLLKEEAERRRQRFNQLSTNPWKAILGTLRPATYSASLQYLDLHLLLMECLIPVEEKSKPRRMLRRVNSAQW 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00347 189 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700|GO:0006355
Vimu2g00347 189 SMART brlzneu 75 137 IPR004827 GO:0003700|GO:0006355
Vimu2g00347 189 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 53 139 IPR043452 GO:0003700|GO:0045893
Vimu2g00347 189 Coils Coil 102 134 - -
Vimu2g00347 189 CDD bZIP_plant_BZIP46 79 125 - -
Vimu2g00347 189 Gene3D - 78 135 - -
Vimu2g00347 189 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 77 129 IPR004827 GO:0003700|GO:0006355
Vimu2g00347 189 SUPERFAMILY Leucine zipper domain 79 130 IPR046347 GO:0003700|GO:0006355
Vimu2g00347 189 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 78 134 - -
Vimu2g00347 189 Pfam bZIP transcription factor 77 126 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00347 Vimu-Chr2 1948737 1950351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00347 60 189 bZIP Transcription Factor Family AT5G44080 46.212 4.18e-25 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu2g00347 bZIP_1 2.5e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00347 K14432 - gmx:100101878 156.762