Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00341 ATGCCGAAGTCGAAGAGAAATAGACAAGTTACGCTATCGAAGACGAAGAAGAAGGGAAGGGATCATAAAGAGGCGATAGTGAACGGAATAAAGGAGGCGGCAGAAAAATACGAGTGCATATACGTGTTCTCGTTCGAGAACATGAGGAATCAGAAATTCAAGGAGTTCAGGGAACAGTTGAAATCCAGTAGCAGGTTCTTTCTTGGCTCTAACAAGGTAATGCAAGTTGCCTTAGGTCGCTCCGCCGCCGATGAGATCAGTCCCGGCATTCATAAGGTTTCAAAGCTATTGCGCGGAGATGCTGGCATGGTTTTTACGAATTTGTCTAAGGAAGAGGTTGAAAGGCTGTTTAAGGAATTTGAAGAATATGATTTTGCAAGAACAGGCAGCCTTGCCACGGAAAAGGTTGATCTCAAAGAGGGACCCTTGGAGCAGTTTACACATGAGATGGAACCTTTTCTACGAAAGCAAGGCATGCCTGCCCCTGGCCAGCGGACATGCTTCATTGTTTTTTCCAATATGACAGGAGTTGTGGAGCTTGTTTCCGATTTTGTTGTTTGTGAGGAAGGGAAGCCACTGTCACCTGAAGCTGCTCGTATATTGCGTTTAATGGGAATCAAGATGGCTACATTTCGTCTTCACCTAATTTGCAGGTGGAGTCGCGATGACTTTGAGCTATACATCGATGGACCCGATGAATCAGATGTTGACTGCTCATAG 720 0.4542 MPKSKRNRQVTLSKTKKKGRDHKEAIVNGIKEAAEKYECIYVFSFENMRNQKFKEFREQLKSSSRFFLGSNKVMQVALGRSAADEISPGIHKVSKLLRGDAGMVFTNLSKEEVERLFKEFEEYDFARTGSLATEKVDLKEGPLEQFTHEMEPFLRKQGMPAPGQRTCFIVFSNMTGVVELVSDFVVCEEGKPLSPEAARILRLMGIKMATFRLHLICRWSRDDFELYIDGPDESDVDCS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00341 239 MobiDBLite consensus disorder prediction 1 21 - -
Vimu2g00341 239 FunFam Ribosome assembly factor mrt4 29 131 - -
Vimu2g00341 239 Gene3D - 30 222 IPR043141 -
Vimu2g00341 239 SUPERFAMILY Ribosomal protein L10-like 20 144 IPR043141 -
Vimu2g00341 239 CDD Ribosomal_P0_like 21 194 IPR033867 GO:0000027
Vimu2g00341 239 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 230 - -
Vimu2g00341 239 MobiDBLite consensus disorder prediction 1 16 - -
Vimu2g00341 239 Pfam Insertion domain in 60S ribosomal protein L10P 126 206 IPR040637 -
Vimu2g00341 239 Pfam Ribosomal protein L10 19 120 IPR001790 -
Vimu2g00341 239 Gene3D - 125 208 IPR043164 -
Vimu2g00341 239 FunFam Ribosome assembly factor mrt4 125 208 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00341 35 227 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 21.320 5.52e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00341 K14815 - gmx:100500064 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00341 2 1904386 1906230 Vimu2g00341 2 1904386 1906230 ECH