Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00338 ACACCACTTTGGCGTAACGGACCAGCTGAGAAACCTGTGTTGTGTAACGCTTGTGGATCACGATACAAGTTGAAAGGGCACCTTGACAATTATCTCCCCAAACATTACAAGAACTATGGTGAAAATCATCTTTCAGACCAACTTTCAGAGCATGGAAACAGCAATGAGTCAAACCCAGATTTCCATTACATATCAGAACAAGATTTTGGGAACAACGTCCCTACAAGGAAACGGTCAAAGGTGGTTTACAGGGAGATGACGCCATTGGAGGAGTTTGGGAAGCAGCTTCTGAGTTTGTATAGAAGTGAAAAGCAGCCAAAGGAGAGGTTCCCAGAAGAGGATATATTGTTGGATAACGTCAACGGCTTCATACCCAGCACTGAGATAGGACTTGGAGTCGTTCTTCTAAGACAGATCCTGGATCATTACCAACCGCAACCTTAA 444 0.4414 TPLWRNGPAEKPVLCNACGSRYKLKGHLDNYLPKHYKNYGENHLSDQLSEHGNSNESNPDFHYISEQDFGNNVPTRKRSKVVYREMTPLEEFGKQLLSLYRSEKQPKERFPEEDILLDNVNGFIPSTEIGLGVVLLRQILDHYQPQP 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00338 147 Gene3D - 1 59 IPR013088 GO:0006355|GO:0008270
Vimu2g00338 147 PANTHER OSJNBB0038F03.10 PROTEIN 1 138 IPR044589 -
Vimu2g00338 147 MobiDBLite consensus disorder prediction 44 72 - -
Vimu2g00338 147 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 1 30 - -
Vimu2g00338 147 SMART GATA_3 1 41 IPR000679 GO:0006355|GO:0043565
Vimu2g00338 147 CDD ZnF_GATA 1 41 IPR000679 GO:0006355|GO:0043565
Vimu2g00338 147 ProSiteProfiles GATA-type zinc finger domain profile. 1 26 IPR000679 GO:0006355|GO:0043565
Vimu2g00338 147 Pfam GATA zinc finger 1 27 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00338 Vimu-Chr2 1895622 1896166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00338 1 41 C2C2-Gata Transcription Factor Family AT5G47140 68.293 8.06e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu2g00338 GATA 1.6e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00338 - - var:108341731 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01466 11 17149735 17154156 Vimu2g00338 2 1895622 1896166 PCT
Vimu2g00338 2 1895622 1896166 Vimu11g03897 11 61008291 61008928 PCT