Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00337 ATGGACAGTGCAATTAGAAGGATTGACGCGGCGATTAAGAGTAGCAGTGATTCAATTTTGGGAAAAGGAGAATACGGCGTCCGTGGATTTGATTCGGCGGTGGATAGTGCCATAAGGAGTAGGACGGCGTCAAATTCGGAAATATTTTCTGTCCATGGATTCAGTTGGACAGTGAAGAATGCCATCCAGAGTACCACTGCACCAAATTCCCAAACACACGAGAGTGTTCGTAGTTTTGGTTGCGCGGTGGAGAATGCAATAATGAGTGGGGCTGGGCCTAATCCCTCTCCTCTGCATAGTTTCGCTTCGGCGGTGGATGAAGCCATTTGCAGCAGAGTTGTTGCCGAAGCCGAAGTTGAAGGTGAAACCGAAGAGTCGCCCAACAGAGCGAGCTACGCGGGATCATGGCAGAAGGGCTACATGTTAGGGAAAGGCTCCTTCGGCACAGAGGTGTCCTTATTGGATCATAGAAACAAGGGCAAACAGTGCATTTTCCAGCTTCGGCAGGAAATATCTCTTTTGAGTCAGTTCCGGCATGACAACATAGTTCAATATCTAGGCACAGACAAGGATAATGATAAGCTGTATATCTTCCTCGAGATTGTAACAAAAGGATCATTGGCAGTTCTCTATCAAAAGTATCAATTAATGGACTCTCAAGTTTCTGCATATACAAGGCAAATTTTAAGCGGCTTGAAGTATCTTCATGATCGTAATGTGGTTCACAGGGACATCAAGTGTGCCAATATATTGGTTGATACAACCGGGTCCATCAAGCTTGCAGATTTTGGTTTGGCAAAGGTTACCAAGTTAAATGATGTTAAATCAATTGGAGGCTCCCTGAACTGGATGGCCCCTGAGGTTGTTAACTTGAGGAGTTGTGGATATGGGCTAGCAGCAGATATATGGAGCTTAGGATGCACAGTATTAGAGATGTTGACACGACAACCTCCTTACTACCATTTGGAAGAAATGCAAGTGATACTTCAAATCGGCGGTGGTGAACCTCCACCTGTTCCGGCATCGGTGTCGACAAATGCCCGAGATTTCATTCTTGAATGCTTACAAGCTGACCCGAACAAACGCCCAACTGTTGCTCAACTATTGGACCATCCATTTGTAAACCTTTGCACCACTCTTAAATATGGAGAGCATAGTGAAGATGCATTCTTACGTTGA 1179 0.4529 MDSAIRRIDAAIKSSSDSILGKGEYGVRGFDSAVDSAIRSRTASNSEIFSVHGFSWTVKNAIQSTTAPNSQTHESVRSFGCAVENAIMSGAGPNPSPLHSFASAVDEAICSRVVAEAEVEGETEESPNRASYAGSWQKGYMLGKGSFGTEVSLLDHRNKGKQCIFQLRQEISLLSQFRHDNIVQYLGTDKDNDKLYIFLEIVTKGSLAVLYQKYQLMDSQVSAYTRQILSGLKYLHDRNVVHRDIKCANILVDTTGSIKLADFGLAKVTKLNDVKSIGGSLNWMAPEVVNLRSCGYGLAADIWSLGCTVLEMLTRQPPYYHLEEMQVILQIGGGEPPPVPASVSTNARDFILECLQADPNKRPTVAQLLDHPFVNLCTTLKYGEHSEDAFLR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00337 392 SMART serkin_6 136 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00337 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Vimu2g00337 392 Pfam Protein kinase domain 161 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00337 392 ProSiteProfiles Protein kinase domain profile. 136 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00337 392 PRINTS Tyrosine kinase catalytic domain signature 300 322 IPR001245 GO:0004672|GO:0006468
Vimu2g00337 392 PRINTS Tyrosine kinase catalytic domain signature 234 252 IPR001245 GO:0004672|GO:0006468
Vimu2g00337 392 PRINTS Tyrosine kinase catalytic domain signature 199 212 IPR001245 GO:0004672|GO:0006468
Vimu2g00337 392 PRINTS Tyrosine kinase catalytic domain signature 343 365 IPR001245 GO:0004672|GO:0006468
Vimu2g00337 392 Gene3D Transferase(Phosphotransferase) domain 1 135 389 - -
Vimu2g00337 392 SUPERFAMILY Protein kinase-like (PK-like) 134 375 IPR011009 -
Vimu2g00337 392 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 73 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00337 Vimu-Chr2 1883561 1886560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00337 127 374 MAP Kinase Kinase Kinase AT4G08500 59.091 9.94e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu2g00337 Pkinase 5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00337 - K13414 vra:106774995 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00337 2 1883561 1886560 Vimu11g01382 11 15597562 15602151 PCT