Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00322 ATGTCTCTAACAGGTCGTTCTCGTATCGTTGTGAATGGTGTCAGAAGAACAAGAACTTTTCACTATTTCTGGTGCCTGTACTGCCAAAGAACCGTGAGGATACCCTTTACAAACAACGATGGTTCTACATGCCCCTATTGCTTCCACCACCTCCGTTACGAGCTTGATATCTCAAGGCCAAGGCTTCTCATGAACGTGCCAAATAACTTGCAACCTTCACCAGCTACACAACTTCTGCATAACTTGGCCCTCATTCTTGATCCACCTCTAAGGAGCCAAAACAACAACCATTTCAACACAACCACACATTGGGAAACAGAAAATGAACATGGTGCAGATCCTCAGGCTTGGATCACACTCCGATTTCCACGGCCAACTCGTGCACCTAGGCCTATTTCCCCACCACAAAACATGGTTCCTCCTACCAATGACACCGACACGTTATTAGATGACTTCATCGATGGGGTGATTCAGAACAATAACAGACCAGGGCCACCTCCTGCAGCATCTTCTGCTATTGCAGCATTGCCATTGGTGAAACTGACACAATCACATCTGGGTAGTGACCCCAATTGCCCTATTTGCAAAGATGAGTTTGAGCTTGACATGGAAGCCAGAGAGTTGCCATGCAAGCATTTCTACCATTCTGACTGCATCACCCCTTGGCTGCGCATGCACAACACTTGCCCCGTGTGCCGCTACGAGCTACAAGGTGTGGTTACTCCTGATACTAATTACAGTTTCCAAAGTGATGAGAATGAGCTGAGGTTTGCCTTTGAGGATATCTCAAACAGCTTGAACTGGATTTGGAACCACTTGGCTTCATTCTGGCCTATTCGTTCAGTCCTAGATTGGACCCGGTCCTACTTTGATTTCCAAGAAACTCGTCTTCGTGTTCGTCGAGGTAATTTCAGGAACCTGCAGGTAGTTCTTCTTGGTGGCGATCATTGTTCGTTATATAGCTCCATCTGTGAGATATCTCGAACTGAAACCTGGTTTATCATACCAGAACTATGTCATGGTTAA 1026 0.462 MSLTGRSRIVVNGVRRTRTFHYFWCLYCQRTVRIPFTNNDGSTCPYCFHHLRYELDISRPRLLMNVPNNLQPSPATQLLHNLALILDPPLRSQNNNHFNTTTHWETENEHGADPQAWITLRFPRPTRAPRPISPPQNMVPPTNDTDTLLDDFIDGVIQNNNRPGPPPAASSAIAALPLVKLTQSHLGSDPNCPICKDEFELDMEARELPCKHFYHSDCITPWLRMHNTCPVCRYELQGVVTPDTNYSFQSDENELRFAFEDISNSLNWIWNHLASFWPIRSVLDWTRSYFDFQETRLRVRRGNFRNLQVVLLGGDHCSLYSSICEISRTETWFIIPELCHG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00322 341 ProSiteProfiles Zinc finger RING-type profile. 192 233 IPR001841 -
Vimu2g00322 341 Pfam Ring finger domain 191 233 IPR001841 -
Vimu2g00322 341 CDD RING-H2_RNF126-like 191 233 - -
Vimu2g00322 341 SUPERFAMILY RING/U-box 173 237 - -
Vimu2g00322 341 SMART ring_2 192 232 IPR001841 -
Vimu2g00322 341 FunFam E3 ubiquitin-protein ligase RING1-like 156 239 - -
Vimu2g00322 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 239 IPR013083 -
Vimu2g00322 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 104 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00322 Vimu-Chr2 1785092 1786249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00322 1 295 C3H Transcription Factor Family AT1G68180 32.323 3.08e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00322 K11982 - gmx:100793656 438.343