Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00309 ATGCTGAGCTCCTTCCTTCTGGTGCTTCTGGCGCTTCCGACGCTGTTCTTGGCCTGCCTTATCATATACGTCCTTTTCGTCCCTTGCATATGGCTTATATGGGACACCATCACTCCCCACCTACCGCTCACCGGAAAAGACCTTCTCATGGGCTCCGAATGCGCCATCTGTCTCGACGACATCGCCACCGACCAACCCGCACGACTGATTCCCGGTTGCAACCACGCCTTCCATGTGGAATGCGCTGACACCTGGCTCTCCAAGCACCCTACATGCCCTCTCTGCAGAGCCAAACTCTACCGAGAACCGAGCAAATCCAAGAGAAGTTCCCTTCACCTCTAA 342 0.5526 MLSSFLLVLLALPTLFLACLIIYVLFVPCIWLIWDTITPHLPLTGKDLLMGSECAICLDDIATDQPARLIPGCNHAFHVECADTWLSKHPTCPLCRAKLYREPSKSKRSSLHL 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00309 113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 105 IPR013083 -
Vimu2g00309 113 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 50 104 - -
Vimu2g00309 113 Pfam Ring finger domain 53 96 IPR001841 -
Vimu2g00309 113 SMART ring_2 54 95 IPR001841 -
Vimu2g00309 113 SUPERFAMILY RING/U-box 47 102 - -
Vimu2g00309 113 ProSiteProfiles Zinc finger RING-type profile. 54 96 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00309 Vimu-Chr2 1718454 1718795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00309 43 99 C3H Transcription Factor Family AT5G42200 58.333 2.36e-21 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00309 K19037 - gmx:100817919 119.783