Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00305 ATGGGAAGAAAAGGTGGAGGAAGGTTTTTTGAAAAATCTCTCCGTCGCCGTATTGAGAACTGCACGTCCAAATACTCTACTGCCGAAGAAATCGCCAACCATCTCCGTTCAACTTATCCCGATTACCACAGAACCAAACAACAAACCCTAATTCGGTTTGTTCAGGAAGCTATTCATTCCATGGAGAAGCTGAATCACACTCCCACGCTTAAGTATTCCGATGACGGCAACATAGAATCCCAACGCGCGTCTCGAAAGCGTAAGAAGAACATTGACGAAGGTGAAGAAAGGCTGAAGAAAATGGAAGCTTTACACGTGCGAAGGAGGGTGCAGAGTTCTTCCGAGAGTAATGACGAGCAGAGTAATGATGAGGAATCGGTGTCTGAGGACGCAATTTACGGTGAGAAGTTGGAGCCTCGGTTTGATTTGATGAAGGAAATGCTAAGGATGTCATATACGCCAAAGAAGGTGGCGGCAGCAGCAACGGAAGAAAAGAACATTGAAATAGAGATGGGTAATATAAGTAAAGGCACGGAGATGGGTAATATAAGTAAAGTCACGGAGATGGGTAATAGAAGTAAAGCCACGGTTCTGAATGACGTGGGAGACCCATCTCTGCTTTCGGTTTCGGTTTCAAACGGCGAGGGGAAGAAAGATTGGCCTAGATTTAAGGATTTTGGTGGGATGAAAGAAGTTTTGGAGGAACTAAGAGAAGAGTTGATTGTACCTTTGGTTCATGGTGAAATTCTTAGAAAATTAGGAGGGAAGCCAAAGGCAGTTGGCATTTTATTGCAGGGTCCACCTGGATGTGGGAAGACCACACTTGCTCATGCTATAGCTAATGAGTCAGGTCTTCCTTACTATCGGATTTCAGCTACTGAACTAGTCTCTGGGGTATCAGGTGCATCTGAAGAAAATATTAGGGAATTTTTTGCTAAAGCTTACAGAACTGCACCTTCTATAGTCTTTATTGATGAGATTGATGCAATTGGTTCTAAAAGAGAGAATTTGCAGCGGGAAATGGAAAAACGAATGGTGATGCAATTAAGCACTTGCATGGATCAATCAAGTGCTGATAATGTTATTGTAATAGGAGCTACAAATAGGCCTGATGCTCTTGACCCTGCCTTAAGAAGAAGGTTTGATCGTGAAATTAACATTTGTGAACCTGATGAATCCGCCAGGAAGGAGATTCTATCTATTCTTACTTCTAATTTTAGATTTGATGGTTTATTTGATCTACATGAAATAGCCAAGTTTACATCAGGATTTGTTGGTGCTGATTTGGTAACTCTAGTTGATAAGGCTCTTCGATGGGCAACGAAGAGAATAATTAACGAAAGAATGAAGAGAATAATAGACCAAAGGAGACATGAAATACCTGAAATCATGAGCGAGCATATTGAAGAATGGCGGAGGGAACCTTTGTCCGCGGAAGAATTAGATGAGTTTGCCTTCATCAAAATCTCCGATTTTGAGCAAGCATTCAAAAAGGTACAACCTTCATTAAGAAGAGAAGGATTTGCTAGCATTCCTAAGGTAAAATGGGAAGACGTTGGGGGGCTTGATCATTTAAGAAAGGAGTTTGAACGATACATTGTAAGGCGTATAAAATATCCTGAAGATTATGAGGCGCTTGGGATTAATCTCGAGACTGGATTTTTGCTTTATGGACCTCCTGGTTGTGGTAAAACATTGATTGCCAAAGCTGTTGCCGGTGAGGCAGGGGCTAGTTTTATCCATATTGAGGGTGCCCAACTTTTAAATAAATATGTTGGGGAAAGTGAGCTTGCCGTTCGAACATTGTTTAGCCGTGCAAGATCATGTGCACCATGTATAATTTTCTTTGACGAGATTGATTCATTGACAAAAGAACGTGGTAAGGAGGGTGGTTGGGTTACTGAGCGACTGTTGAACCAGTTGCTTATCGAGTTGGATGGTGGAGAGCATCGGCACGGTGTTTTTGTGATTGGTGCTACAAATAGGCCTGAGATGATGGATCGAGCTCTCTTACGGCCGGGTAGATTTGGTAAACTTCTTTATGTTCCTCTACCTGGCCTTGATGAGCGAGTTTTGATATTGAAAGCTCTTGCAAGGACTATGACAATTGATGCCACTGTGGATTTGAGTGCGATTGCTAGAATGGAAGTTTGTGAAAACCTAAGTGGCGCTGATCTTCGTAAATTGATGAGTGAAGCGGCAATGGCTGCTTGGGATGAGAAAGATAAAACTGTCAAGAGTATTCATTTTGAGATGGCACTAAGTAAAATCTCGCCGTCAGTGTCTAACAGGGAAAAGCAGTATTATCAACGCTTGTCGGAGAGCTTTAAAGTGGCGTGA 2340 0.4226 MGRKGGGRFFEKSLRRRIENCTSKYSTAEEIANHLRSTYPDYHRTKQQTLIRFVQEAIHSMEKLNHTPTLKYSDDGNIESQRASRKRKKNIDEGEERLKKMEALHVRRRVQSSSESNDEQSNDEESVSEDAIYGEKLEPRFDLMKEMLRMSYTPKKVAAAATEEKNIEIEMGNISKGTEMGNISKVTEMGNRSKATVLNDVGDPSLLSVSVSNGEGKKDWPRFKDFGGMKEVLEELREELIVPLVHGEILRKLGGKPKAVGILLQGPPGCGKTTLAHAIANESGLPYYRISATELVSGVSGASEENIREFFAKAYRTAPSIVFIDEIDAIGSKRENLQREMEKRMVMQLSTCMDQSSADNVIVIGATNRPDALDPALRRRFDREINICEPDESARKEILSILTSNFRFDGLFDLHEIAKFTSGFVGADLVTLVDKALRWATKRIINERMKRIIDQRRHEIPEIMSEHIEEWRREPLSAEELDEFAFIKISDFEQAFKKVQPSLRREGFASIPKVKWEDVGGLDHLRKEFERYIVRRIKYPEDYEALGINLETGFLLYGPPGCGKTLIAKAVAGEAGASFIHIEGAQLLNKYVGESELAVRTLFSRARSCAPCIIFFDEIDSLTKERGKEGGWVTERLLNQLLIELDGGEHRHGVFVIGATNRPEMMDRALLRPGRFGKLLYVPLPGLDERVLILKALARTMTIDATVDLSAIARMEVCENLSGADLRKLMSEAAMAAWDEKDKTVKSIHFEMALSKISPSVSNREKQYYQRLSESFKVA 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00305 779 ProSitePatterns AAA-protein family signature. 654 672 IPR003960 GO:0005524|GO:0016887
Vimu2g00305 779 ProSitePatterns AAA-protein family signature. 361 380 IPR003960 GO:0005524|GO:0016887
Vimu2g00305 779 Pfam Nucleolin binding domain 4 62 IPR031996 -
Vimu2g00305 779 Pfam AAA+ lid domain 707 751 IPR041569 -
Vimu2g00305 779 SMART AAA_5 258 391 IPR003593 GO:0016887
Vimu2g00305 779 SMART AAA_5 550 686 IPR003593 GO:0016887
Vimu2g00305 779 Gene3D - 214 388 IPR027417 -
Vimu2g00305 779 Gene3D - 512 769 IPR027417 -
Vimu2g00305 779 MobiDBLite consensus disorder prediction 78 114 - -
Vimu2g00305 779 Gene3D - 685 755 - -
Vimu2g00305 779 Pfam ATPase family associated with various cellular activities (AAA) 555 683 IPR003959 GO:0005524|GO:0016887
Vimu2g00305 779 Pfam ATPase family associated with various cellular activities (AAA) 262 387 IPR003959 GO:0005524|GO:0016887
Vimu2g00305 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 506 IPR027417 -
Vimu2g00305 779 MobiDBLite consensus disorder prediction 65 132 - -
Vimu2g00305 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 775 IPR027417 -
Vimu2g00305 779 Gene3D - 390 506 - -
Vimu2g00305 779 FunFam Ribosome biogenesis ATPase RIX7 212 388 - -
Vimu2g00305 779 FunFam ATPase, AAA family protein 512 704 - -
Vimu2g00305 779 PANTHER AAA-FAMILY ATPASE 89 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00305 Vimu-Chr2 1708493 1712653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00305 487 777 Calmodulin-binding Proteins AT3G56690 43.729 1.93e-66 237