Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00298 ATGAGTTTGAGTTCGGCAGCACCTTCTCCGTCCCCGACATCGACATGCCCCATGGACTTGAATTATGTGCTGAGAATCCCATGGAACACTTCTATTTGCCACAACTTCCAAGAGAATTTGGCAGCAAGAAATGGAACAGATGCAAACACTTGTTGCATATCACTGTTGTCCCTCTTTGGCGTAGGACTTGCGCAGCATCTCAAAGAGACTTCTCAGTTCCAACTCCCCAACCTTGCCACCTCAGTTTCGTGCATGCAAGACTTCCAATCGAAGATCTCTTCTCTCTCTCTCCCCGAGAACCTTGTAGACTCCTGCTTTGACCCTCATCAGTTTGTGATCTCTCCCAACATCTGTGCTGGGATTCAAACAATCTCTGATTGGAACAAAAAGCTTGGTCAGTCCACCGCACTCAACACTGCTTGCAAACCGGATCTCTCCGATCTCCCCCTCTGTGATTTGTGTGTGGGAGCTGGGTTACAGGTCAAGCAGGAGCTTATTTCCATAGATGGTAACACTTCGCACTCCATGGATTGTTTTTACTTTACAATACTCTATGCTGCTGGGATTGTGAACGAGTTTGGACCTGAAAGCAATGGTGCCGTGACTTGTATTTTTAGCATGCCGGTTTATTCACGGGGGGGTTCTGGGGGAAAGAGTCACCAGGCTCTTGTTTTTGGGTTGACGGGAGCTGGGGTGGCTTTGCTGGTGATGTCTTCTCTGTTGGGGCTTTATGTGTGGTGCGACAGGAAGCACAGGAAGAAAAAGCTTGAGACTTTTCAGTTTGATTTTGATCCTGAGGAACAAGGGTCTAGGCGTAGATTGAGGCCTAATACGGGGTCCATTTGGTTCAAAATTGGGGAGCTTGAGAAAGCCACTGATAATTTTTCATCTAAGAACTTCATTGGCCGTGGTGGGTTTGGGTTGGTTTACAAGGGAACCTTGCCTGATGGGACTGTGGTGGCGGTTAAAAGGATCTTGGAATCTGATTTTCAAGGAGATGTGGAGTTCTGTAATGAGGTGGAGATTATTAGCAACCTGAAGCATCGCAATCTGGTGCCTCTGAGAGGCTGTTGTGTGGCTGAGGAGAGTGAGAATTATGACGAAAGGGGAAGCCAAAGGTATCTTGTGTATGATTACATGCCAAATGGGAACCTGGAGGACCATCTGTTTGTGTCATCGGACTCTCCGAAAGCAAAGGGATCATTGACATGGCCTGAGAGGAAAAGCATAATCTTGGATGTGGCAAAGGGGTTGGCCTATTTGCACTATGGAGTTAAACCTGCAATTTTCCACAGGGATATCAAAGCCACCAATATTCTACTTGATGCGGATATGAGGGCAAGAGTTGCTGATTTTGGTCTTGCCAAACAAAGCCGAGAGGGTCAGTCTCATCTGACAACCAGAGTGGCTGGAACTCATGGATATCTAGCTCCAGAATATGCACTCTATGGTCAGCTCACTGAGAAGAGTGATGTGTATAGTTTTGGTGTAGTTGTTCTGGAGATTATGTGTGGGAGAAAAGCTCTTGACTTGTCTTCATCAGGATCACCAAGGGCATTCTTGATCACAGATTGGGCCTGGTCACTGGTAAAGGCTGGGAAGTTAGAAGAGGCTCTAGATAGTTCCCTGGTGAAGGATGAGAACTTTCCTAGCTCAAATCCTAAGAGCATAATGGAGAGGTTTTTGCTGGTGGGAATTCTATGCTCCCATGTCATGGTTGCTTTGAGGCCAACAATTGCTGATGCTTTGAAGATGTTGGAAGGTGACATTGAGGTTCCACAAATCCCAGATCGCCCTATGCCTCTTGGTCACCCTGCCTTTTACAATGATGCCAGTACTTTTAGCATATCTCCAGCATTAAGTGGCCTCAAGTTGCAAACTGGAGACATGCTCAGGTAA 1899 0.4676 MSLSSAAPSPSPTSTCPMDLNYVLRIPWNTSICHNFQENLAARNGTDANTCCISLLSLFGVGLAQHLKETSQFQLPNLATSVSCMQDFQSKISSLSLPENLVDSCFDPHQFVISPNICAGIQTISDWNKKLGQSTALNTACKPDLSDLPLCDLCVGAGLQVKQELISIDGNTSHSMDCFYFTILYAAGIVNEFGPESNGAVTCIFSMPVYSRGGSGGKSHQALVFGLTGAGVALLVMSSLLGLYVWCDRKHRKKKLETFQFDFDPEEQGSRRRLRPNTGSIWFKIGELEKATDNFSSKNFIGRGGFGLVYKGTLPDGTVVAVKRILESDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVAEESENYDERGSQRYLVYDYMPNGNLEDHLFVSSDSPKAKGSLTWPERKSIILDVAKGLAYLHYGVKPAIFHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKAGKLEEALDSSLVKDENFPSSNPKSIMERFLLVGILCSHVMVALRPTIADALKMLEGDIEVPQIPDRPMPLGHPAFYNDASTFSISPALSGLKLQTGDMLR 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00298 632 Pfam Protein kinase domain 297 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00298 632 PANTHER OS01G0750732 PROTEIN 44 594 - -
Vimu2g00298 632 Pfam SPARK 12 179 IPR043891 -
Vimu2g00298 632 CDD STKc_IRAK 301 588 - -
Vimu2g00298 632 ProSiteProfiles Protein kinase domain profile. 295 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00298 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Vimu2g00298 632 FunFam probable receptor-like protein kinase At1g11050 254 379 - -
Vimu2g00298 632 SUPERFAMILY Protein kinase-like (PK-like) 279 619 IPR011009 -
Vimu2g00298 632 SMART serkin_6 295 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00298 632 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Vimu2g00298 632 Gene3D Phosphorylase Kinase; domain 1 265 379 - -
Vimu2g00298 632 Gene3D Transferase(Phosphotransferase) domain 1 380 594 - -
Vimu2g00298 632 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 380 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00298 Vimu-Chr2 1653355 1655253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00298 11 632 Receptor kinase-like Gene Family AT1G11050 65.169 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vimu2g00298 Pkinase 2.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00298 - - gmx:100806560 1138.25