Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00294 ATGGAGGGGAATTTCAGTTCCTATAACCCTCAACTAGCTTCTAGCTTGAAGGCCAGTTACAGTAAGCAGGAGCATGATCATTCAGGGGAGGATCATCATCTCAAAGAAGAAGATTATATGTCTCCATCTTTCAATCTGAGCAATATTTCTAAGCTCATTCTTCCCCCACTTGGTGTTTCAAGCCAGAATCCTGTTAACTCAAAAGGGTGGATCATATCACCAATGGATTCCAGATACAGGTACAACTACCTTAACAGTAAAGCCACGATTTTGAAAAACCTTGTGTGTTTTTCGAGGTGTTGGGAGAGTTTTATGGTTCTTCTGGTAGCTTATTCTGCATGGGTTTATCCCTTCGAAGTTGCTTTCATGCACAAAACTTATAACATGAAAATCTATGTTGCGGACACTGTTGTTGATATTTTCTTCGGTATTGACATTGTTTTGACTTTCTTCTTGGCTTACATTGATCGAACAACTCATCTACTAGTTCGAGACAAGAAGAAGATTGTAGTAAGATATTTGTCTACATGGTTCTTGATGGATTTGGCATCAACCATACCATATGAGGCACTTGGGTATTTGTTCACTGGAAAACACAAAGTGGGTCTCCCATACTTCCTCTTGGGCCTGCTTAGATTTTGGAGAATAAGACGAGTCAAGCAATTCTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGATCCGATGTGCTAGGCTTCTTTCTGTAACACTTTTTTCAGTTCATTGTGCTGGATGTCTGTATTACATGCTAGCTGATCGTTATCCCCACAAAGGGAAGACATGGATTGGAGCTGTGAACCCAAACTTCAGAGAGACAAGCCTTCGGATCAGATACATTTCTGCCATGTACTGGTCCATCACTACCATGACCACTGTAGGTTATGGAGACCTTCATGCCGTCAACACCATGGAGATGATCTTCATTATTTTCTACATGCTCTTTAACCTTGGCCTAACTTCTTATTTGATTGGTAACATGACAAATCTTGTCGTCGAAGGAACTCGTCGTACCATGGAATTTAGAAATAGCATTGAGGCAGCATCAAACTTTGTGTGCCGAAATCGGTTGCCTCCGAGGTTAAAAGAACAGATCTTGGCGTACATGTGTTTGAGATTTAAGGCAGAGAGTTTGAATCAGCATCAGCTTATTGAGCAGCTACCAAAGTCTATTTGCAAAAGCATCTGCCAGCATTTGTTTTTTGAAACTGTGGAGAAAGTCTATCTTTTCAAAGGCGTATCAAAAGAAATAATTTTGTCCCTTGTTGCAAAAATGAAGGCAGAGTACATACCACCGAGAGAGGATGTTATCATGCAAAATGAAGCACCAGATGATATTTACATTATTGTGTCTGGAGAAGTCGAGATCATTGATAGTGTGATGGAGAAAGAGAAAACTTTAGGGACTCTGCATACTGGGGACATGTTTGGAGAGGTTGGTGCCCTTTGTTGTAGACCTCAGAGCTTTACCTACAGAACCAAGACTCTTACACAGCTACTGAGACTGAAAACCAACACCCTTCTAGAGTCAATGCAGATTAAAAGAGAAGACAACATACAAATACTCAAAAATTTTCTTCAGCATTTCAAGCAGATTAAGAATCTGAGTATCAAAGATTTGATGGGGGAGAATGTGGAAGAAGAGGACCCTAACATGGCTGTGAACTTGTTAACTGTGGCCAGCACAGGCAATGCAGCTTTTCTTGAGGAGCTTCTGAGAGCAGGTTTGGATCCTGACATTGGAGACTCCGAAGGGAAAACTCCATTGCATATAGCAGCATCAAATGGGCATGAAGAGTGTGTTAAAGTGTTACTAAAACATACATGCAACATACATATAAAAGACATGAATGATAACACTGCAATGTGGGGTGCTATAGCATCAAAACATTACTCCATATTTCGACTTCTATTCCAGTTTGCTGCTCTCTCAGACCAGAACACAGCAGGTGATCTTTTGTGTACAGCCGCCAAAAGAAACGAATTAACAGTGATGGCAGATCTTTTAAAACAAGGATTAAACGTTGACTCTAAAGATCGTCATGATGCAACAGCAATCCAAATTGCTATGGCAGAAAATCATGTGGAAATGGTTAAGTTGCTTGTCCTGAATGGTGCAGATGTATCTGATGTACATAATCATGAATTTTGTTCATCCACCATGACTGAAATGCTGCATAATTGTGAAATTGGACATAGAATTAATGTAATTGAGTTGATGCCGGATGAAGTTGCATCAAAAGGGAAACATCAAGAGGAGGAACATATAGGAGAAACAAGATGTGATGGACCAAAGATTGCTAGAGTAAGCATATATAGAGGTCATCCTGTAGTAAGAAGAGAAAAGGGTATCATGCAAGCTGGGAAGCTAATAAGGATGCCTGATTCATTAGATGAACTCAAAAAAATTGCAGGTGAAAAATTTGGGATTGATGCGAAAGATGCAATGGTAACAAATGAAGAAGGAGCAGAAATAGACTCCATTGATGTGATTAGAGATAACGATAAACTTTATTTTGTTGACTGA 2553 0.3984 MEGNFSSYNPQLASSLKASYSKQEHDHSGEDHHLKEEDYMSPSFNLSNISKLILPPLGVSSQNPVNSKGWIISPMDSRYRYNYLNSKATILKNLVCFSRCWESFMVLLVAYSAWVYPFEVAFMHKTYNMKIYVADTVVDIFFGIDIVLTFFLAYIDRTTHLLVRDKKKIVVRYLSTWFLMDLASTIPYEALGYLFTGKHKVGLPYFLLGLLRFWRIRRVKQFFTRLEKDIRFSYFWIRCARLLSVTLFSVHCAGCLYYMLADRYPHKGKTWIGAVNPNFRETSLRIRYISAMYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTSYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFFETVEKVYLFKGVSKEIILSLVAKMKAEYIPPREDVIMQNEAPDDIYIIVSGEVEIIDSVMEKEKTLGTLHTGDMFGEVGALCCRPQSFTYRTKTLTQLLRLKTNTLLESMQIKREDNIQILKNFLQHFKQIKNLSIKDLMGENVEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSEGKTPLHIAASNGHEECVKVLLKHTCNIHIKDMNDNTAMWGAIASKHYSIFRLLFQFAALSDQNTAGDLLCTAAKRNELTVMADLLKQGLNVDSKDRHDATAIQIAMAENHVEMVKLLVLNGADVSDVHNHEFCSSTMTEMLHNCEIGHRINVIELMPDEVASKGKHQEEEHIGETRCDGPKIARVSIYRGHPVVRREKGIMQAGKLIRMPDSLDELKKIAGEKFGIDAKDAMVTNEEGAEIDSIDVIRDNDKLYFVD 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00294 850 Pfam KHA, dimerisation domain of potassium ion channel 777 848 IPR021789 -
Vimu2g00294 850 ProSiteProfiles Ankyrin repeat region circular profile. 593 624 - -
Vimu2g00294 850 PANTHER POTASSIUM CHANNEL AKT1 45 848 IPR045319 GO:0005249|GO:0006813
Vimu2g00294 850 CDD CAP_ED 418 531 IPR000595 -
Vimu2g00294 850 FunFam Potassium channel KAT2 406 542 - -
Vimu2g00294 850 ProSiteProfiles Ankyrin repeat profile. 690 722 IPR002110 GO:0005515
Vimu2g00294 850 ProSiteProfiles KHA domain profile. 777 850 IPR021789 -
Vimu2g00294 850 Gene3D Jelly Rolls 385 560 IPR014710 -
Vimu2g00294 850 PRINTS EAG/ELK/ERG potassium channel family signature 135 145 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00294 850 PRINTS EAG/ELK/ERG potassium channel family signature 288 305 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00294 850 PRINTS EAG/ELK/ERG potassium channel family signature 314 325 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00294 850 PRINTS EAG/ELK/ERG potassium channel family signature 146 155 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00294 850 PRINTS EAG/ELK/ERG potassium channel family signature 332 341 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00294 850 Pfam Cyclic nucleotide-binding domain 438 521 IPR000595 -
Vimu2g00294 850 Pfam Ankyrin repeats (3 copies) 569 648 IPR002110 GO:0005515
Vimu2g00294 850 SMART cnmp_10 418 535 IPR000595 -
Vimu2g00294 850 SUPERFAMILY cAMP-binding domain-like 345 537 IPR018490 -
Vimu2g00294 850 Pfam Ion transport protein 99 347 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu2g00294 850 SUPERFAMILY Ankyrin repeat 548 724 IPR036770 -
Vimu2g00294 850 Gene3D - 99 341 - -
Vimu2g00294 850 Gene3D - 562 737 IPR036770 -
Vimu2g00294 850 SMART ANK_2a 690 719 IPR002110 GO:0005515
Vimu2g00294 850 SMART ANK_2a 560 589 IPR002110 GO:0005515
Vimu2g00294 850 SMART ANK_2a 626 657 IPR002110 GO:0005515
Vimu2g00294 850 SMART ANK_2a 593 622 IPR002110 GO:0005515
Vimu2g00294 850 PRINTS Ankyrin repeat signature 706 720 IPR002110 GO:0005515
Vimu2g00294 850 PRINTS Ankyrin repeat signature 594 609 IPR002110 GO:0005515
Vimu2g00294 850 FunFam Potassium channel KAT3 100 342 - -
Vimu2g00294 850 ProSiteProfiles cAMP/cGMP binding motif profile. 418 537 IPR000595 -
Vimu2g00294 850 ProSiteProfiles Ankyrin repeat region circular profile. 690 718 - -
Vimu2g00294 850 SUPERFAMILY Voltage-gated potassium channels 97 341 - -
Vimu2g00294 850 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00294 Vimu-Chr2 1617777 1622282 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00294 1 598 Ion Channels AT4G22200 68.709 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00294 K21867 - gmx:100798422 1459.89