Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00290 ATGTGTTGTTTGGTTGCCACTCAAATGAGACAAGGTGAAGCCAATTCAGTTCGAGTTGAGAAAGAGAATAACAAGGACTGGTTGCGCCATGCCAATGCTCATGAGAATTTCTCCTCCCAAGAGAAGTTTTTGGGCTCTAATTTTCTGTTCTCTGTTCCGCCCAAGAAGCCTTGCCACCAAGAACCGGACCCTGGGACTGCCAGGTTTGTTTTTCAACAAAGTGAAAATATTCAAGTTTCACAGAGAGTACAATTTGACAAGGCTTGGGATGCTCTTTCAAGTCTACAAAATTCTAGTAGGAACTATGTACAACCTGGAAAAAATGTCAATGTTAATTGGCAGAGTCATGAGAATACGAGAACAGCACCAATCCATGGAGGCTATCAGAATGACAGCCGTATGTGTCCTGATGTCACTGACATTCCAGTTGTTAGCAGAAATACTTCTTGGGGTTTGGATGGTTCATTGAACAATCATAATAAGTGCACAGGTCAAATCAACGAGTCTTCTAACTGCATGTCTGGAGATATTGATGATGATAACATACTTGAGATCCATGTAGATGCTGATTTCTCTCTCTTTGTTTCCGTCCTGCTTCTGGTTGCCTTTAAGAACATTGATGTTGACCAAATTGTTGAGAAATACCAGTCTACCTGCACTCCTAAGCCGTCAATATCCAAGCTTCCTCCTGTAACACCAAATGCAGATAAAGATGAATTTGCTAGACAGGGGGGTGATGTTTTGCCACCAGACCTGTGTTTAGATTGCATCCATGGGTACAAGCTAGGGCTTTGCCCTGAAGCAGCAATTCATTTGCAGGAATTGAAGGATAATCTAATTGCAATCTCTAATGAACTGCTCGACAATGGTGAAAACCTCAATTCTACACAGATATCAAAGCTTCGCCATGATAGGTCACAGTTGAATAATCAAATTCAGCAACTAGAAAAATATATTCAATCAAGTAATCTTAACGAGGAAAGGCAAAAGTCACATTTTTCTGCATCCACGGCACCACCCACATCATATGTGTATGAAACACCTCAGCAAACTGGTGCCTGTAATGGATCCAAGCAATACGATACTCAGGCTCATATGGGTAATGGGACATGTGGTTCAACATTCCAGTCTCTTCCATCTTTTTCAGTTGACAATTATAGCACATCATCCGGTCCGTTGGAGCGGGAAGCATTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCCACGATTTTCCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAGGTATTTGGAAATCATTCCTTTCGCCCCAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACTTATCAGTTACCGGCTCTTGTTTGTCATGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAGGATCAAATAATGCACTTACTGCAGTTAAATATACCAGCTGCTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGAGATCCTCCGAGAACTTAATTCTGATTACTGCAAATACAAGTTATTATATGTGACACCTGAAAAGGTTGTCAAAAGTGATAATCTTTTGCGACACTTAGAGAATTTACATGTTCGTGAGCTGCTTGCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAACAGAAATTCCCAAATACTCCAGTTTTAGCTTTAACAGCTACAGCAACTGCTAGCGTAAAAGAAGATGTCGTGCAAGCACTCGGTCTTGTTAACTGTGTTGTTTTTCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTGTCCCGAAGACCAAAAAGTGTTTGGAAGACATTGACAAATTCATTAGAGAGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTCGCTAGCAATTTACAGGAATGTGGACATAAATGTGCATTTTATCATGGTACCATGGATCCTGCTCAACGTGCCTTTGTTCAAAAGCAGTGGAGCAAAGATGAAATCAACATAATTTGTGCTACAGTAGCATTTGGAATGGGTATTAATAAACCCGATGTCCGCTTTGTAATTCACCATTCTCTTCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGCCGAGCTGGTAGAGATGGTCAACGTTCATCCTGTGTATTATATTATAATTATAGTGATTATATACGAGTCAAGCATATGATAAGTCAAGGAGCAATAGAGCAAAGTCCCATGGCCTCTGGATACAATCGTTCAAATATGATAAATCCTGGAAGCATACTAGAAACGAACACCGAAAACCTTATGCGAATGGTTAGTTATTGTGAAAATGATGTCGACTGTCGGCGCCTTCTGCAGCTTGTTCATTTTGGGGAGAAGTTTAATTCTTCAACTTGTCACAAAACGTGTGATAATTGCTTGAAGATCACAAATTTCATCGAGAAGGATGTCACAGATATAGCAAAGCAATTGGTTGAACTTGTTAAGCTAACGGGACAGAGGTTCTCATCATCTCATATATTAGAAGTCTATCGTGGTTCCTTTAGCCAAATGGTCAAGAAAAATCGTCATGAGACAGTGAGCCTCCATGGTGCTGGAAAACATCTAGGTAAGGGTGAGGCTTCCCGTATATTGCATCATCTTGTTGTTGAGGATATTCTTGTGGAAGAAGTAAAGAAAAGTGACTATTATGGATCGGTATCGTCAATATTGAAGGTAAATGAGCTCAAGGTCTGTAATCTGTTTGCTGGGCACAGAATTATATTGAGATTTCCATCGACTGTAAAGGCATTAAAACCAGGGAAATCCGATGTAACTCCAGCCAAGGGTTCTTTGACATCTGGGAAGCCGAATGTTATTCCAACTAACGCTCCTCAGCCTCAAACTGAAGTGGATTTGAATCTTTCAGCCAAGTTATACACTGCTCTGCGTATGTTGAGGACAACTCTTGTTAAAGAAGCTGGAGATAGTGTTTTTGCTTACCACATATTTGGTAATGCCACGTTGCAGCAGATGAGCAAGAGAGTGCCGAGAACGAAAGAAGAACTCCTCGATATCAATGGCATTGGCAAGGCAAAGGTAAACAAGTATGGGGATGAGATACTGGAAACCATTGAGAATACTATAAATGAATATTACAAGTTGGACAAAGCCAGTAGCGGCAGCAAAGGCAGTGCAGATTCTGCTAAAAGGAGACGACAGTCAAATGGAGATCCATATGCAAATGCTGAGGACGATGACGCCCTCACCAATAGTACAGGTCGTTCTAAGAAAAGGACTATAAAGAGACAAAATAAAAAAGCTGTGATATATGATTCTGCAGAGGAAGATTATTTTTCTGGATGCCATGATGAAGACCTAGACTTTGACCTCATAGAAATTGATGCATTAGATCAGGTGACTTGTAAAAATGCTTCTGGGAGAGTACTACCTCAATGGACAACATCTTGA 3570 0.4042 MCCLVATQMRQGEANSVRVEKENNKDWLRHANAHENFSSQEKFLGSNFLFSVPPKKPCHQEPDPGTARFVFQQSENIQVSQRVQFDKAWDALSSLQNSSRNYVQPGKNVNVNWQSHENTRTAPIHGGYQNDSRMCPDVTDIPVVSRNTSWGLDGSLNNHNKCTGQINESSNCMSGDIDDDNILEIHVDADFSLFVSVLLLVAFKNIDVDQIVEKYQSTCTPKPSISKLPPVTPNADKDEFARQGGDVLPPDLCLDCIHGYKLGLCPEAAIHLQELKDNLIAISNELLDNGENLNSTQISKLRHDRSQLNNQIQQLEKYIQSSNLNEERQKSHFSASTAPPTSYVYETPQQTGACNGSKQYDTQAHMGNGTCGSTFQSLPSFSVDNYSTSSGPLEREAFIPKIIEVNYIEGSGDKRWSSHDFPWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALVCHGITLVISPLVSLIQDQIMHLLQLNIPAAYLSANMEWTEQQEILRELNSDYCKYKLLYVTPEKVVKSDNLLRHLENLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVASNLQECGHKCAFYHGTMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYIRVKHMISQGAIEQSPMASGYNRSNMINPGSILETNTENLMRMVSYCENDVDCRRLLQLVHFGEKFNSSTCHKTCDNCLKITNFIEKDVTDIAKQLVELVKLTGQRFSSSHILEVYRGSFSQMVKKNRHETVSLHGAGKHLGKGEASRILHHLVVEDILVEEVKKSDYYGSVSSILKVNELKVCNLFAGHRIILRFPSTVKALKPGKSDVTPAKGSLTSGKPNVIPTNAPQPQTEVDLNLSAKLYTALRMLRTTLVKEAGDSVFAYHIFGNATLQQMSKRVPRTKEELLDINGIGKAKVNKYGDEILETIENTINEYYKLDKASSGSKGSADSAKRRRQSNGDPYANAEDDDALTNSTGRSKKRTIKRQNKKAVIYDSAEEDYFSGCHDEDLDFDLIEIDALDQVTCKNASGRVLPQWTTS 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00290 1189 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 648 809 IPR001650 -
Vimu2g00290 1189 Pfam RQC domain 853 963 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vimu2g00290 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 772 IPR027417 -
Vimu2g00290 1189 SUPERFAMILY HRDC-like 1009 1082 IPR010997 GO:0000166|GO:0044237
Vimu2g00290 1189 FunFam ATP-dependent DNA helicase RecQ 413 630 - -
Vimu2g00290 1189 CDD DEXHc_RecQ 431 630 - -
Vimu2g00290 1189 ProSiteProfiles HRDC domain profile. 1006 1088 IPR002121 GO:0003676
Vimu2g00290 1189 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 562 571 IPR002464 -
Vimu2g00290 1189 FunFam ATP-dependent DNA helicase Q-like 4A 854 964 - -
Vimu2g00290 1189 CDD SF2_C_RecQ 631 763 - -
Vimu2g00290 1189 Pfam RecQ zinc-binding 765 847 IPR032284 -
Vimu2g00290 1189 MobiDBLite consensus disorder prediction 975 998 - -
Vimu2g00290 1189 Gene3D HRDC domain 1005 1094 IPR044876 -
Vimu2g00290 1189 MobiDBLite consensus disorder prediction 1091 1138 - -
Vimu2g00290 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 897 IPR027417 -
Vimu2g00290 1189 PANTHER DNA HELICASE RECQ FAMILY MEMBER 409 1097 - -
Vimu2g00290 1189 Pfam HRDC domain 1010 1078 IPR002121 GO:0003676
Vimu2g00290 1189 SMART RQC_2 856 966 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vimu2g00290 1189 MobiDBLite consensus disorder prediction 1099 1113 - -
Vimu2g00290 1189 FunFam ATP-dependent DNA helicase Q-like 4A 1002 1088 - -
Vimu2g00290 1189 Gene3D - 854 963 IPR036388 -
Vimu2g00290 1189 MobiDBLite consensus disorder prediction 980 998 - -
Vimu2g00290 1189 Gene3D - 631 849 IPR027417 -
Vimu2g00290 1189 SMART hrdc7 1006 1088 IPR002121 GO:0003676
Vimu2g00290 1189 SMART ultradead3 436 639 IPR014001 -
Vimu2g00290 1189 Gene3D - 404 630 IPR027417 -
Vimu2g00290 1189 Coils Coil 298 325 - -
Vimu2g00290 1189 FunFam Bloom syndrome, RecQ helicase 631 851 - -
Vimu2g00290 1189 SMART helicmild6 673 754 IPR001650 -
Vimu2g00290 1189 Pfam DEAD/DEAH box helicase 442 610 IPR011545 GO:0003676|GO:0005524
Vimu2g00290 1189 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 448 623 IPR014001 -
Vimu2g00290 1189 Pfam Helicase conserved C-terminal domain 647 753 IPR001650 -
Vimu2g00290 1189 NCBIfam RecQ family ATP-dependent DNA helicase 432 907 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00290 Vimu-Chr2 1584431 1599981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00290 662 785 Eukaryotic Initiation Factors Gene Family AT3G19760 23.622 3.25e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00290 K10901 - gmx:100800006 1899.02