Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00288 ATGGAGAAGTACGAGCTCGTCAAGGATATAGGATCTGGGAATTTTGGGGTGGCAAGGCTCATGCGGCACAAAGAAACCAAGGAGCTTGTTGCCATGAAATATATTGAAAGGGGTCACAAGATTGATGAGAATGTTGCCAGGGAAATCATAAACCATAGAAGTCTTCGCCACCACAATATTATTCGGTTCAAGGAGGTGGTTTTGACTCCTACTCATCTGGGTATTGTTATGGAGTATGCAGCTGGTGGAGAGCTCTTTGAGAGGATTTGCAGTGCTGGAAGATTCAGTGAAGATGAGTTCTCTACTCATCACAGGCATGAAGCTACTTATCTCCCTTCCCTGACTTCATTGCTGGCAACCGAGTGCTTGGAAATTCAATTTTTTGATTTTCATTCTTGTTATCTCCTACTTTTCCAGGGTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGCAAATCTGTCATCGAGACTTGAAGCTTGAAAACACCTTATTGGATGGCAGCCCTGCCCCAAGGCTCAAAATTTGTGATTTTGGTTACTCTAAGTCATCCCTGCTTCATTCAAGACCCAAGTCAACTGTGGGAACCCCAGCCTACATTGCGCCTGAGGTTCTTTCACGCAGAGAATACGATGGAAAGCTAGCTGATGTATGGTCCTGTGGAGTGACTCTTTATGTAATGTTGGTGGGAGCATACCCATTTGAAGACCAAGACGATCCCAAAAATTTTAGGAAAACCATCAATAGAATTATGGCTGTCCAATACAAGATCCCCGACTATGTTCACATATCTCAAGACTGCAGACATATGCTATCTCGCATTTTTGTGGCAAATCCAGCCAGGAGAATTACCATTAAGGAAATCAAGTCCCACCCATGGTTTCTAAAGAACTTGCCTAGAGAATTAACAGAAGTAGCTCAAGCTGCCTACTACAGAAAAGAAAATCCAACCTTTTCACTTCAGAGTATAGAAGACATCATGAATATTGTTGAGGAGGCCAAGATTCCACCACCGGCATCCAGGTCAGTTGGAGGATTTGGTTGGGGAGGAGAAGAAGATGAGGATGAAACAAAAGAAGCAGAGGTTGAGGCTGAGGAAGATGAGTATGAAAAGAGAGTCAAAGAAGCACAGGCAAGCGGGGAATTTCATGTTAGTTAG 1176 0.4362 MEKYELVKDIGSGNFGVARLMRHKETKELVAMKYIERGHKIDENVAREIINHRSLRHHNIIRFKEVVLTPTHLGIVMEYAAGGELFERICSAGRFSEDEFSTHHRHEATYLPSLTSLLATECLEIQFFDFHSCYLLLFQGRYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTINRIMAVQYKIPDYVHISQDCRHMLSRIFVANPARRITIKEIKSHPWFLKNLPRELTEVAQAAYYRKENPTFSLQSIEDIMNIVEEAKIPPPASRSVGGFGWGGEEDEDETKEAEVEAEEDEYEKRVKEAQASGEFHVS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00288 391 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vimu2g00288 391 Coils Coil 365 385 - -
Vimu2g00288 391 MobiDBLite consensus disorder prediction 355 370 - -
Vimu2g00288 391 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vimu2g00288 391 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Vimu2g00288 391 Pfam Protein kinase domain 4 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00288 391 ProSiteProfiles Protein kinase domain profile. 4 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00288 391 SMART serkin_6 4 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00288 391 Gene3D Transferase(Phosphotransferase) domain 1 135 308 - -
Vimu2g00288 391 MobiDBLite consensus disorder prediction 344 391 - -
Vimu2g00288 391 FunFam Serine/threonine-protein kinase SRK2A 133 308 - -
Vimu2g00288 391 CDD STKc_SnRK2 3 299 - -
Vimu2g00288 391 SUPERFAMILY Protein kinase-like (PK-like) 2 334 IPR011009 -
Vimu2g00288 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Vimu2g00288 391 PANTHER SERINE/THREONINE KINASE 2 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00288 Vimu-Chr2 1574457 1576719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00288 3 303 CBL-interacting serine-threonine protein kinases AT4G24400 37.419 1.16e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vimu2g00288 Pkinase 9.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00288 K14498 - gmx:100812259 621.698