Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00277 ATGGAACTATCAGATTTGCAAAACAACAAGCAAAACATCACCAACACAAACAACACCAACACAAAAACAAACACAGGACCACCACCAGGAGGAGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGACGCCGGCGGTGGTAGTGGTGGTAGTGCTGCTACTCATCCTCGTCCACACCCCCACCATCATCACCAACAATCTTCTTCTTCCCATGTTGTCAGGCCAAACCCTCCATCTCCTTTCATCTCTTCCTCCACCACTTCTTCTTCTTCTAATTCTTCCTCCTCTTCCTCTTCTGCGTCAGCTTCTTCCCACATCATCGATGCCTCCTTGGCCATCGCCACCAGATCTGATGATTCCGCAAACAAGACCCAACCGCTCCCCACCACCGTCGCCGCGCCCTCCCCCGCCGCCAACCCTCCCAAGCGATCCACCAAGGACAGGCATACCAAGGTCGACGGCCGCGGCCGCAGAATTCGAATGCCCGCCACCTGCGCTGCTAGGGTTTTCCAATTGACTAGAGAATTGGGCCACAAGTCCGACGGAGAGACCATCGAGTGGCTCCTTCAGCAGGCCGAACCCGCCATCATCGCCGCCACCGGGACCGGCACCATCCCCGCTAATTTCTCCACCCTCAACGTCTCCTTCCGCAGCAGCGGCTCCACGCTGTCGGCACCGCCTTCCAAGTCGGCCCCGCACACCTTTCACGGCGCGCTCGCACTAGCTCACCACCCTTACGACGAAGCCTTTCAGCACCCCGCTTTACTTGGCTTCCACCCTCACGCTCACGCTCACCAGCAGCACCAACAGCACCAACAGCACCAGCAGCAACAACTTCTTTCCGCCGATCAAATCGCGGAAGCGCTTCCCAGCGGCGGCGGTGACTCCGGCGATGGCTATCTCAGGAAACGCTACCGAGAAGATCTGTTCAAAGACGATAACATTAACACCCAATCACAGAACGAGAGCGGTGACGGTTCTTCGCCTAAAACTCCGAACCTACAGCTACCAAAGCAGCAGCCCCAGCAGCAAAACGAAACTGGTTCTGGGCTTCTCAGGCCCACGAATTTGCTACCCGCCACAGCGATGTGGGCCGTGGCGCCCGCTCCCGCCAGTGGACCTCCGGGCAGCACAATTTGGATGCTACCAGTAACCGCGGCTTCTTCCGGTTCTGCTGCAGCTGCAGCTACCGGTTCAGCTTCTTCTTCTTCTGGTGGTGGTGGTGGATCCTCTGCGAGTTCGGAGAGTCAGATGTGGCCTTTTCCTCAGAGTGGTTTCATGCCAAGGTTCAATCTTCCGAGTGCGCTTGAATTCCAAGGCGCACGTGCGGGTTCTCTGCAATTAGGGTCAATGTTAATGCCGCAGCAACCTTCTCAACATCTGGGTCTCGCCATGTCCGACTCCAACTTCGGCATGTTAGCTGCCCTTAATGCTTTCACAAGACCTGGTTTCAATATTAATTCCGACAATCATCATCCTCATCACCATCACCATCATCACCATCATCATCCCTTGGAGCATCAGCATCAGCATCAACATCAACACCAACCCAGTGAGAGTGGAGAAGATGCTCCTAACAGCTCCCAATGA 1587 0.5595 MELSDLQNNKQNITNTNNTNTKTNTGPPPGGAAAAAAAAAADAGGGSGGSAATHPRPHPHHHHQQSSSSHVVRPNPPSPFISSSTTSSSSNSSSSSSSASASSHIIDASLAIATRSDDSANKTQPLPTTVAAPSPAANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSFRSSGSTLSAPPSKSAPHTFHGALALAHHPYDEAFQHPALLGFHPHAHAHQQHQQHQQHQQQQLLSADQIAEALPSGGGDSGDGYLRKRYREDLFKDDNINTQSQNESGDGSSPKTPNLQLPKQQPQQQNETGSGLLRPTNLLPATAMWAVAPAPASGPPGSTIWMLPVTAASSGSAAAAATGSASSSSGGGGGSSASSESQMWPFPQSGFMPRFNLPSALEFQGARAGSLQLGSMLMPQQPSQHLGLAMSDSNFGMLAALNAFTRPGFNINSDNHHPHHHHHHHHHHPLEHQHQHQHQHQPSESGEDAPNSSQ 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00277 528 MobiDBLite consensus disorder prediction 1 101 - -
Vimu2g00277 528 MobiDBLite consensus disorder prediction 68 101 - -
Vimu2g00277 528 MobiDBLite consensus disorder prediction 1 27 - -
Vimu2g00277 528 MobiDBLite consensus disorder prediction 483 528 - -
Vimu2g00277 528 MobiDBLite consensus disorder prediction 117 131 - -
Vimu2g00277 528 MobiDBLite consensus disorder prediction 490 508 - -
Vimu2g00277 528 MobiDBLite consensus disorder prediction 117 156 - -
Vimu2g00277 528 MobiDBLite consensus disorder prediction 395 420 - -
Vimu2g00277 528 MobiDBLite consensus disorder prediction 308 353 - -
Vimu2g00277 528 Pfam TCP family transcription factor 143 277 IPR017887 -
Vimu2g00277 528 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 83 472 IPR005333 GO:0003700
Vimu2g00277 528 MobiDBLite consensus disorder prediction 395 424 - -
Vimu2g00277 528 ProSiteProfiles TCP domain profile. 144 198 IPR017887 -
Vimu2g00277 528 MobiDBLite consensus disorder prediction 141 156 - -
Vimu2g00277 528 MobiDBLite consensus disorder prediction 313 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00277 Vimu-Chr2 1515951 1517537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00277 141 468 TCP Transcription Factor Family AT1G35560 46.970 1.40e-66 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu2g00277 TCP 5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00277 - - ccaj:109804339 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00277 2 1515951 1517537 Vimu2g00277 2 1515951 1517537 ECH