Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00276 ATGGAAGAGTTTGAGTATGAAGAGGTTGTCAAAGCAACAGAAAACTTCAACCCCAGAAGGGTCGTAGGAAAAGGAAGCCATGGGATGGTGTACAAAGGCGTTCTTCGATTCAAACAAAACAACAGCTTCAGGTTGGTCGCCGTAAAGAAGCCATCGCAAGGCCTTCTATCTCTTCACGACAACTCCAAACTCGAAAACGAAATCCGAGTTCTATCTTCTCTACCCGAAAACCCTCACGTGGTTAATCTTCTGGGAACCACCAGTGGTGATGATCACGGCCACAAACTCATTGTGATGGACTTCATGCCCAATGCCTCTCTTCATGACTTGCTTCATGCCGATGAAAACCCACCCACGTGGCCCAAACGCGTTCAAATCGCCATGCAAATCGCTCGTGCGGTTCAGTTTCTTCACCAAGGTAAGCCTGTGGTGATTCACAGAGACATTAAACCCTCCAATATATTGTTTGATTCACGTTGGAATGCGAAGTTGGCAGATTTCGGACTCGCGGTGAGAGGGGTTGATCCGGTGAGTCGACCCGCTGGGACAATGGGGTACTTGGACCCGTGTTACACCACCCCAGATAAACTCAGCACTAAAAACGACATTTTCAGTTTTGGGGTTGTGTTGTTGGAGATCATAAGTGGTAGAAAGGCCATCGATGCCTGCAAAACACCGGCTTCAGTTGTGGAATGGGCGGTTCAGTTAATGGATGAACAGGTTTTGAAAGAGATATGTGATGCGAGAGTGGCACTGCCGGGTTACATGGTTGAAACAATCACTCGCCTGTTAGGCTACGCTTCACGTTGTGTGTCAGAAAACGAAGATGAACGTCCTTCAGCTGGTGAAATTGTTATGGGAATGGAAAGTTGGTTGGCGAAACGAGTAAGGTTCCCCGTTTGGAGGCGCGTTTTGAATAATGGGTTGGTTTGGTTGAGGAAGAGGAAGCCGATGATGAGTATTGGTTGGCAAACTCAGACACGAATTCAGTGTATAGCAGAAGAAGAGGGCGAGGTAGAGGGTGTTGGTGTTGCAAGTGGGAAGATATCCATCACCATAAGGGAGGTTTTGGCTGATGTTAACGTTGGAATGACTCAAATTCAGATGAGTTGA 1113 0.4735 MEEFEYEEVVKATENFNPRRVVGKGSHGMVYKGVLRFKQNNSFRLVAVKKPSQGLLSLHDNSKLENEIRVLSSLPENPHVVNLLGTTSGDDHGHKLIVMDFMPNASLHDLLHADENPPTWPKRVQIAMQIARAVQFLHQGKPVVIHRDIKPSNILFDSRWNAKLADFGLAVRGVDPVSRPAGTMGYLDPCYTTPDKLSTKNDIFSFGVVLLEIISGRKAIDACKTPASVVEWAVQLMDEQVLKEICDARVALPGYMVETITRLLGYASRCVSENEDERPSAGEIVMGMESWLAKRVRFPVWRRVLNNGLVWLRKRKPMMSIGWQTQTRIQCIAEEEGEVEGVGVASGKISITIREVLADVNVGMTQIQMS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00276 370 PANTHER OS01G0253100 PROTEIN 2 289 - -
Vimu2g00276 370 Gene3D Phosphorylase Kinase; domain 1 1 101 - -
Vimu2g00276 370 Gene3D Transferase(Phosphotransferase) domain 1 102 298 - -
Vimu2g00276 370 ProSiteProfiles Protein kinase domain profile. 16 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00276 370 SMART serkin_6 16 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00276 370 FunFam Serine/threonine-protein kinase-like protein At5g23170 102 298 - -
Vimu2g00276 370 ProSitePatterns Protein kinases ATP-binding region signature. 22 50 IPR017441 GO:0005524
Vimu2g00276 370 Pfam Protein tyrosine and serine/threonine kinase 20 285 IPR001245 GO:0004672|GO:0006468
Vimu2g00276 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vimu2g00276 370 SUPERFAMILY Protein kinase-like (PK-like) 3 297 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00276 Vimu-Chr2 1509056 1510168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00276 4 299 Receptor kinase-like Gene Family AT3G59420 41.176 1.46e-58 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vimu2g00276 PK_Tyr_Ser-Thr 1.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00276 - - gmx:100305389 434.491