Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00274 ATGTCAAGCATCAATACCAGCAGTTTCACCAACCCAGAAGAAGAAAGCGATGAGGAAGAGTTTGGGTACATGGAGTGTCGTCGCAACCATGCAGTAGCCAATGGAGGAGCTTGCTATGATGGGTGCAATGAGTATATGAAACCAAACGCCGAGCGAAACTCTGAGGACAGTTTCCTCTGTGCATGTTGTGGTTGTCACCGCAACTTTCACCGTAAACGCAATACCGTGCAGCAAACTGAAACACAGAGTGATTATGTTCTTGATGTAGTTCCTTTTCCAGGCATGTTTCAGTCAGAAAGGCCTACCAACGACGAAGACAACAACAACAACCCAGAGCCATTGCAGCAAGTAAGGCCACTGAGGAGGAAGAGGACGACCTTCTCGGTGGAGCAGAAGAACGAAATGAGAAGGTTTGCTGATATTTTGGGGTGGAAACCTCACAAGGGTAACAGAGAGGAGATTCAACGTTTCTGCACTGACATGGGCATAAGCCGCAAGATCTTCGTGGTGTGGCTCAACAACAATCGTCACCGTGCAACTCAAAATTCCACCCAGACAACTCATCCATCAACCACTTGA 579 0.4767 MSSINTSSFTNPEEESDEEEFGYMECRRNHAVANGGACYDGCNEYMKPNAERNSEDSFLCACCGCHRNFHRKRNTVQQTETQSDYVLDVVPFPGMFQSERPTNDEDNNNNPEPLQQVRPLRRKRTTFSVEQKNEMRRFADILGWKPHKGNREEIQRFCTDMGISRKIFVVWLNNNRHRATQNSTQTTHPSTT 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00274 192 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 178 - -
Vimu2g00274 192 MobiDBLite consensus disorder prediction 1 21 - -
Vimu2g00274 192 MobiDBLite consensus disorder prediction 95 125 - -
Vimu2g00274 192 ProSiteProfiles 'Homeobox' domain profile. 118 182 IPR001356 GO:0003677
Vimu2g00274 192 SUPERFAMILY Homeodomain-like 112 179 IPR009057 -
Vimu2g00274 192 MobiDBLite consensus disorder prediction 100 115 - -
Vimu2g00274 192 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 23 73 IPR006456 -
Vimu2g00274 192 Gene3D - 104 182 - -
Vimu2g00274 192 Pfam ZF-HD protein dimerisation region 22 73 IPR006456 -
Vimu2g00274 192 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 23 73 IPR006456 -
Vimu2g00274 192 NCBIfam homeobox domain, ZF-HD class 121 176 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00274 Vimu-Chr2 1504487 1505065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00274 23 176 ZF-HD Transcription Factor Family AT4G24660 34.104 1.83e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu2g00274 ZF-HD_dimer 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00274 - - vra:106775003 346.665