Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00273 ATGGCTGCCATTTTCGTTTGGATTTTCGTATTCTTCTCCCTCTTCGCCTCCAACTATGCCTTCGATTCCTTGGATCCTTTTGGCAACATCACCATCTCATGGGATTATTTATCCGACAACGGGGACACAATCGACGTGAGGGTATCGATATACAACTTTCAACTATTTCGTCACGTGGAGGAGCCTGGTTGGAAATTGGGATGGGCATGGAAAGGTGACGAGGTGATTTGGTCAATGCTGGGAGCAGAAGCAAAGGAGCAAGGGAATTGCACAAGATTTAGAGGACAACAGAAACCACATTGTTGCAAGAAGGAACCAGTTATCATTGATCTCATGCCTGGAACCCCCTACAACATGCAGACCGCAAATTGCTGCAAAGCTGGCATCCTTACATCCCTTAAACAAGATCATACAAAACTCGGTGCCACCTTCCAAATGAATTACGTAAAACCATCACTCTCCGATTCTGGTCCCGGTTTTACCATGCCAGAAAATTTCACCCTTGGAATTCCTGGCTATAGCTGTGGGACACCATTTCAAGTCCCGCCGACCATGTTTACCAAAGACGGACACAGATGGCAACAAGTCTTGGAGACTTGGAATGTGACATGTATTTACTCCCAGTTTCTAGCATCACCTGCTCCAAAATGTTGCGTCTCTCTGTCTGCATTCTACAACAGTACTATCGTTCCTTGTCCCACATGCAGTTGTAATTGCCGAGGACTACCAGGAGCGACTTGTGTGGATTCTGATAAGACTTCAATGTTGCAACTAGCACAACCAAATGGCGGAGAAGCAGCAGCACCGGTGATCAGGTGTTCACATCACATGTGCCCCATTCGTATTCACTGGCATGTGAAACAAAGTTACAAAGAGCATTGGCGGGTGAAGATCACGATCACAAACATGAACTTTGCGAAAAACTATTCCCAATGGAATTTGGTGGTGCTGCATCCTAACATGGGAAACGTAACTCAGGTGTTCAGTTTCAACTACGAACCTCTGACAGTTCATGGAAAATTGAGGGACATAGGGATGTTTTGGGGGCTGGCGTATTACAATGACATGTTGCTTACACATGGAGAGAATGGGAATGTGCAAACAGAGGTGTTACTACATAAAGATCGAGGAAAGTTCAGCTTCAGAGAAGGGTGGAGTTTTCCTAGAAAAGTTTCATTCAATGGAGATGAATGTGTGATGCCATCTCCTGATGCATATCCTAGACTTCCCAACGCAGCTCATGTTGCCATTACAAGCCTTAACACAATTTTCTTTTCACTGTTTCTGATACTCTTGTAG 1299 0.4496 MAAIFVWIFVFFSLFASNYAFDSLDPFGNITISWDYLSDNGDTIDVRVSIYNFQLFRHVEEPGWKLGWAWKGDEVIWSMLGAEAKEQGNCTRFRGQQKPHCCKKEPVIIDLMPGTPYNMQTANCCKAGILTSLKQDHTKLGATFQMNYVKPSLSDSGPGFTMPENFTLGIPGYSCGTPFQVPPTMFTKDGHRWQQVLETWNVTCIYSQFLASPAPKCCVSLSAFYNSTIVPCPTCSCNCRGLPGATCVDSDKTSMLQLAQPNGGEAAAPVIRCSHHMCPIRIHWHVKQSYKEHWRVKITITNMNFAKNYSQWNLVVLHPNMGNVTQVFSFNYEPLTVHGKLRDIGMFWGLAYYNDMLLTHGENGNVQTEVLLHKDRGKFSFREGWSFPRKVSFNGDECVMPSPDAYPRLPNAAHVAITSLNTIFFSLFLILL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00273 432 PIRSF COBRA 1 432 IPR006918 GO:0010215|GO:0016020
Vimu2g00273 432 PANTHER PROTEIN COBRA 7 426 IPR006918 GO:0010215|GO:0016020
Vimu2g00273 432 Pfam COBRA-like protein 46 207 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00273 Vimu-Chr2 1488354 1490323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00273 20 432 COBRA Gene Family AT3G29810 52.038 2.41e-159 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00273 - - lang:109329241 684.1