Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00255 ATGGGAGACGACTCGCCAAAAAATAAAGTAAAGTTCCTCTGCAGCTACGCCGGCAAGGTCCTTCCACGACCCTCCGATGGGATTCTAAGGTACGTCGGCGGCGAGACTCGGGTGGTTTCAGTGCCTCGTGACGTGACCTTCTCCGAGTTGATGAAGAAGGTGGGGAGCATGGTGGAGGGGGAGGTGGTGCTCAAGTACCAGCTTGTCCCGGAAGATCTGGACGCGTTGGTGTCTGTTAGGACGGAGGAAGATGTGAAGCACATGATCCAGGAGCACGACCGCCACCACATAGGATTGCTCCGTGCATTCCTCTTTCCGTCAAACAAGATGTGTTTGGCTGCGTCGGAAACCTATCCATTGGAGCAACGTTACATCGACGCCGTGAACGGGATCCTGAGAACAAGCCCTAAGGCCACGACCAGGGGCTCTGCGTGTTCTTCTCCGAAATCAATCTCACCAGATGCAGGGGATCAGTACTCCCCTCGCTTTGGCAATTCGATATCCATATCCAGTGCGATGCAGATGCAGAGAGTGCGAAGCTCTCCCAGCCTATCCAACATGGATCAGCAAGCTCATTACCACCAACATTCCCATCTCCCTTTTCACAACTATCCATCTTTCTCTACCACTAGACCGCCCCAAGATCCTCAAATAACAAGACTTGGTGGAAGGGGTGCCTCCTTCAACCACCACCACTCAAACCCCAGACAACCCCCCACCAGAGGACTAGCACACTACGGCTACCCTGATGACTCTGCAACTTATGTGAATGCCCTTCATAACATCCCCAGAAATAACCCTCGGAGAACCTCAAATCAGCTATGCAATCCAGATATTATACAGCTGAAGCGAAAAGCTAAAAAAATATAG 870 0.5184 MGDDSPKNKVKFLCSYAGKVLPRPSDGILRYVGGETRVVSVPRDVTFSELMKKVGSMVEGEVVLKYQLVPEDLDALVSVRTEEDVKHMIQEHDRHHIGLLRAFLFPSNKMCLAASETYPLEQRYIDAVNGILRTSPKATTRGSACSSPKSISPDAGDQYSPRFGNSISISSAMQMQRVRSSPSLSNMDQQAHYHQHSHLPFHNYPSFSTTRPPQDPQITRLGGRGASFNHHHSNPRQPPTRGLAHYGYPDDSATYVNALHNIPRNNPRRTSNQLCNPDIIQLKRKAKKI 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00255 289 MobiDBLite consensus disorder prediction 137 160 - -
Vimu2g00255 289 Pfam PB1 domain 29 106 IPR000270 GO:0005515
Vimu2g00255 289 Gene3D - 30 106 - -
Vimu2g00255 289 SUPERFAMILY CAD & PB1 domains 25 110 - -
Vimu2g00255 289 SMART PB1_new 24 107 IPR000270 GO:0005515
Vimu2g00255 289 MobiDBLite consensus disorder prediction 222 244 - -
Vimu2g00255 289 PANTHER OS05G0427100 PROTEIN-RELATED 4 260 - -
Vimu2g00255 289 CDD PB1_UP2 13 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00255 Vimu-Chr2 1402558 1403957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00255 3 144 MAP Kinase Kinase Kinase AT3G46920 44.516 1.62e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00255 - - vun:114186951 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00255 2 1402558 1403957 Vimu2g00255 2 1402558 1403957 ECH