Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00254 ATGGCTTGCTCAAGCGCTCAAATACATGGCCTTGGAACCCCCTCCTTCGCCTCTTCCCGAACCCTATTTTTGGGTCAGAGGTTAAACACCAAGGCCTTTATCAAGGTCAAAAGTAAACCCAGGAGGCACGCTCCTCTCCGTGTCGTCAATGAGAAAGTGGTCGGCATCGACCTCGGAACTACTAATTCCGCGGTCGCCGCCATGGAAGGCGGGAAACCCACTATTATCACCAACGCCGAGGGCCAAAGAACCACCCCCTCTGTTGTCGCATATACTAAGACTGGCGACAGACTCGTCGGCCAAATTGCCAAGCGTCAGGCCGTCGTTAACCCGGAGAACACTTTCTTCTCCGTCAAGAGGTTCATTGGCAGGAAGATGTCCGAGGTGGACGAGGAGTCCAAGCAGGTCTCGTACAGAGTCATCAGAGATGACAACGGCAACGTCAAACTCGACTGCCCCGCCATTGGTAAACAGTTCGCCGCCGAGGAAATTTCTGCCCAGAGAATTGTTGACTGGTTGGCTTCCAATTTCAAGAAAGATGAAGGCATAGACCTTTTAAAAGACAAACAAGCTCTTCAACGTCTCACCGAGACAGCAGAGAAAGCTAAAATGGATCTCTCATCATTGAGTCAAACTAACATAAGTTTACCATTCATTACTGCTACAGCAGATGGTCCCAAACATATCGAGACAACTCTCACAAGGGCTAAATTCGAGGAATTGAGTTCAGATCTTCTTGACAGGCTCAGGACACCAGTTGAGAACTCATTAAGGGATGCAAAACTCTCATTTAAGGATCTTGATGAGGTTATCCTTGTGGGTGGATCTACCCGTATTCCAGCCGTTCAGGAGCTTGTAAAGAAGTTGACTGGCAAGGACCCGAATGTCACTGTCAATCCTGATGAAGTGGTTGCCCTTGGAGCTGCAGTTCAGGTGGAGAGAATGGTGAAGGAAGCTGAGAAATTCTCAAAGGAAGACAAAGAGAAGAGGGACGCTATTGACACTAAGAATCAGGCAGATTCTGTGGTGTACCAGACAGAGAAACAATTGAAAGAGCTTGGAGACAAGGTCCCTGGACCTGTGAAAGAGAAGGTTGAAGCAAAACTAGGGGAGCTTAAAGACGCAATTTCTGGGGGTTCGACACAAGCTATTAAGGATGCCATGGCTGCCCTCAATCAGGAAGTTATGCAGCTTGGTCAGTCCCTTTACAACCAGCCAGGAGCTGCTGGCGCAGGAGGCCCTACTCCCCCACCTGGTGCCGATGCTGGCCCCTCAGAATCTTCCGGCAAGGGACCGGACGGTGATGTCATAGATGCTGATTTCACCGACTCAAAATGA 1338 0.4963 MACSSAQIHGLGTPSFASSRTLFLGQRLNTKAFIKVKSKPRRHAPLRVVNEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYTKTGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVIRDDNGNVKLDCPAIGKQFAAEEISAQRIVDWLASNFKKDEGIDLLKDKQALQRLTETAEKAKMDLSSLSQTNISLPFITATADGPKHIETTLTRAKFEELSSDLLDRLRTPVENSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQVERMVKEAEKFSKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPGPVKEKVEAKLGELKDAISGGSTQAIKDAMAALNQEVMQLGQSLYNQPGAAGAGGPTPPPGADAGPSESSGKGPDGDVIDADFTDSK 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00254 445 ProSitePatterns Heat shock hsp70 proteins family signature 3. 270 284 IPR018181 -
Vimu2g00254 445 Gene3D Actin; Chain A, domain 4 171 249 - -
Vimu2g00254 445 MobiDBLite consensus disorder prediction 402 445 - -
Vimu2g00254 445 Gene3D - 250 299 - -
Vimu2g00254 445 FunFam Molecular chaperone DnaK 165 249 - -
Vimu2g00254 445 ProSitePatterns Heat shock hsp70 proteins family signature 1. 56 63 IPR018181 -
Vimu2g00254 445 PRINTS 70kDa heat shock protein signature 80 92 - -
Vimu2g00254 445 PRINTS 70kDa heat shock protein signature 52 65 - -
Vimu2g00254 445 PRINTS 70kDa heat shock protein signature 103 111 - -
Vimu2g00254 445 SUPERFAMILY Actin-like ATPase domain 167 313 IPR043129 -
Vimu2g00254 445 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 310 397 IPR029048 -
Vimu2g00254 445 Pfam Hsp70 protein 167 312 IPR013126 GO:0005524|GO:0140662
Vimu2g00254 445 SUPERFAMILY Actin-like ATPase domain 53 168 IPR043129 -
Vimu2g00254 445 FunFam heat shock 70 kDa protein-like 48 155 - -
Vimu2g00254 445 Coils Coil 192 212 - -
Vimu2g00254 445 FunFam Molecular chaperone DnaK 309 408 - -
Vimu2g00254 445 PANTHER HEAT SHOCK PROTEIN 70KDA 53 167 IPR013126 GO:0005524|GO:0140662
Vimu2g00254 445 Gene3D - 44 170 - -
Vimu2g00254 445 Gene3D - 312 406 IPR029048 -
Vimu2g00254 445 Gene3D - 300 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00254 Vimu-Chr2 1398432 1403001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00254 168 366 Calmodulin-binding Proteins AT5G02500 39.048 7.51e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00254 K03283 - nnu:104586953 340.502