Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00253 ATGGCCTCCGCTAGCCTCGGAACTGGTGGGGTCGGCAGTTCCAGCTCCGTTAACGCTGCCTTTAGGGGTTCTTCCAGTTCCGTCGATTGGCTTGGCAGAGAGATGCTCGAGATGAGATTGAGAGACCACGACGAAGACAGGGATAGTGAGCCTGACATCATCGATGGTGTGGGTGCTGAGACCGGGCACGTGATAAGAACCAAATTCTCGAATTCTCGAGGTTCTGGAATCATGGTTGACCTGTTGACAACTGGCGAGTTCTTTCTGACACAAAATGTCAGTTATATTGCAGAACACGTGGTTGGAACAGGCTCTTTTGGTGTTGTTTTTCAGGCAAAATGTAGAGAAACGGGAGAGATTGTAGCTATCAAGAAGGTTCTCCAGGACAAGCGCTACAAGAATAGAGAGTTACAGATTATGCAAATGCTGGATCATCCAAATATTGTTGCCTTACGGCATTGTTTCTTCTCAACAACTGACAAAGAAGAAGTTTACTTGAATCTTGTCCTTGAATATGTTCCTGAAACCGTGAATCGCATCGCAAGGAGCTACAGCAGGATTAACCAGCGAATGCCTTTGATATATGTAAAGCTTTATACCTACCAGATTTGCAGGGCCCTTGCTTATATACACAACTGCATTGGTATATGTCACCGTGACATCAAACCTCAGAACCTACTTGTGAATCCCCATACTCATCAACTGAAACTATGTGATTTTGGTAGTGCAAAAGTGTTGGTAAAAGGAGAACCAAACGTTTCTTACATCTGTTCAAGATACTACCGTGCTCCAGAACTTATATTTGGGGCCACCGAATATACAACTGCCATAGACATATGGTCTACTGGTTGCGTAATGGCTGAATTACTCCTTGGACAGCCATTGTTTCCTGGGGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAGGTTTTGGGAACTCCAACTAGGGAGGAGATAAAGTGCATGAACCCTAATTATACTGAGTTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGAACAGCTGCATTTTAACCATTGTTGAACCTGTACCATGCACTTCATTAACGATACGGGGTGTCGATGTGGTCCATTTGATGGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGATCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCGTTGGAGGCTTGCATTCATCCCTTTTTTGATGAATTGAGGGACCCGAACACCCGTCTTCCTAATGGTCGACCACTTCCTCCACTTTTCAATTTTAAATCTCAGGGTGAGTTTAATTAG 1308 0.4427 MASASLGTGGVGSSSSVNAAFRGSSSSVDWLGREMLEMRLRDHDEDRDSEPDIIDGVGAETGHVIRTKFSNSRGSGIMVDLLTTGEFFLTQNVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEEVYLNLVLEYVPETVNRIARSYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKNSCILTIVEPVPCTSLTIRGVDVVHLMVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKSQGEFN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00253 435 CDD STKc_GSK3 90 409 IPR039192 -
Vimu2g00253 435 SMART serkin_6 95 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00253 435 SUPERFAMILY Protein kinase-like (PK-like) 94 428 IPR011009 -
Vimu2g00253 435 FunFam Glycogen synthase kinase-3 beta 82 174 - -
Vimu2g00253 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Vimu2g00253 435 ProSiteProfiles Protein kinase domain profile. 95 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00253 435 Pfam Protein kinase domain 97 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00253 435 FunFam Shaggy-related protein kinase kappa 175 348 - -
Vimu2g00253 435 Gene3D Phosphorylase Kinase; domain 1 86 174 - -
Vimu2g00253 435 Gene3D Transferase(Phosphotransferase) domain 1 175 434 - -
Vimu2g00253 435 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 51 431 - -
Vimu2g00253 435 ProSitePatterns Protein kinases ATP-binding region signature. 101 125 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00253 Vimu-Chr2 1391912 1396779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00253 101 414 Core Cell Cycle Gene Families AT1G76540 33.230 6.61e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vimu2g00253 Pkinase 6.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00253 K03083 - gmx:100799387 735.332