Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00244 ATGGATCCAGAAAGCGTTCGTTTTATGTCAAGGGAGGTTATTGTGCTGCGGAGGCTTGATCATCCCAATGTCATGAAGCTTGAGGGCATGATTGCCTCACGGGTCTCTGGTAGCCTGTACCTTATCTTTGAATATATGGAGCACGATCTTGCAGGACTTGCAGCAATACCTGACATCAAGTTTTCCGAAGCACAGATCAAGTGTTACATGCAACAGCTTCTTCGTGGTCTAGAGCATTGCCACAGTCGTGGTGTCATGCATCGTGACTTAAAAGGTTCAAATCTTCTGGTTGACAGTAATGGCAGACTGAAGATTGCTGATTTTGGGCTAGCAACTTTGCTTCAGTCAGCTCAGGGGCTGCCTTTAACAAGTCGGGTAGTGACCTTGTGGTACAGGCCACCTGAACTTTTACTTGGAGCTACAGATTATGGAACTACTGTGGAGCAACTACATAAAATCTTCAAACTGTGTGGATCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGTTGCCACATGCAACAATTTTTAAACCTCAACATCCTTACACACGCGTTGTTTCTCAGACATTCAAGGATTTTCCTTCATCTACACTGAGCCTCTTGGAGGTCCTTCTAGCTGTTGAATCGGATGATCGGGGAACTGCATCTTCAGCACTTCGGCATGAGAAACCAGGACTGTGTAATACTAAGCACGTCTCTGAGAAGTACAACTACGAAAAGGATGACGGTTATGGTTTCTCTCGCGAACCTGTAAAGGCAACGTCAACAGCACACAATGTATTTTCTCATTCTGGCCAGTCAATGCATCCAAGTGTTTATGGATCCTCACGCACTATGAATTTGAAAGAGGAAAATGTCCTCATATGCCCTGATCATGGCTTTATATCAAGAAAGTCTGAGTTGAGCAAACATACTTCCTATTGGCAAGGTAGTGCCGCAAAATTGTCAACATTTTCTAATTCAATTGCAGCTCGAGGTGATTCACTTCTTGAAATGAGTGGTGGTGACTTTGGTGTGAATTCGCAGTTGCCAGAAGATCAATTTGGCACGAGATATAGCCATAAAGCATATGGTGAGTCCAAGCAATTGTTGGAAGGACTCAAATCTTAA 1110 0.4369 MDPESVRFMSREVIVLRRLDHPNVMKLEGMIASRVSGSLYLIFEYMEHDLAGLAAIPDIKFSEAQIKCYMQQLLRGLEHCHSRGVMHRDLKGSNLLVDSNGRLKIADFGLATLLQSAQGLPLTSRVVTLWYRPPELLLGATDYGTTVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYTRVVSQTFKDFPSSTLSLLEVLLAVESDDRGTASSALRHEKPGLCNTKHVSEKYNYEKDDGYGFSREPVKATSTAHNVFSHSGQSMHPSVYGSSRTMNLKEENVLICPDHGFISRKSELSKHTSYWQGSAAKLSTFSNSIAARGDSLLEMSGGDFGVNSQLPEDQFGTRYSHKAYGESKQLLEGLKS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00244 369 PANTHER CELL DIVISION PROTEIN KINASE 146 222 - -
Vimu2g00244 369 ProSiteProfiles Protein kinase domain profile. 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00244 369 Gene3D Transferase(Phosphotransferase) domain 1 46 144 - -
Vimu2g00244 369 Gene3D Phosphorylase Kinase; domain 1 8 45 - -
Vimu2g00244 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 85 97 IPR008271 GO:0004672|GO:0006468
Vimu2g00244 369 Pfam Protein kinase domain 9 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00244 369 SMART serkin_6 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00244 369 Gene3D Transferase(Phosphotransferase) domain 1 145 243 - -
Vimu2g00244 369 SUPERFAMILY Protein kinase-like (PK-like) 4 222 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00244 Vimu-Chr2 1348443 1351710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00244 11 297 Core Cell Cycle Gene Families AT5G10270 36.311 4.12e-63 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vimu2g00244 Pkinase 6.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00244 - - pop:18111131 390.963