Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00242 ATGGGAAGGAAAAAGCCAGAGGATGCTGGCCCATCTGCGAAGACCAAGACTAAAGATGCTCCCAAGAAGGAAAAATTTTCTGTCTCTGCTATGCTGGCCAGTATGGATGAAAAGTCTGACAAACCCAAAAAGGTCTCTTCCAGTAAGCCGAAGCCAAAATCTGCTCCAAAAGCTTCTGCATACACGGATGGTATTGATCTTCCGCCTTCTGATGATGAAGATGATGGTCTCCTAGAACAGGAGGAGGAGAAAAATAATGCATCCAAACGTGGAAGTCAGCAGCAAAGGCCTGATTTAAAGCCACTCGATGTGCCTATTGCTGATAAAGAGTTAAAAAAGCGTGAAAAGAAGGATCTTTTAGCAGCACATGCTGCTGAGCAGGCAAAGAGGGAGGCTCTTAAGGATGATCATGATGCATTCACTGTGGTCATTGGAAGCCGAGCTTCGGTGCTTGATGGAGATGATGATGCTGACGCTAATGTGAAAGATATAACAATAGAAAATTTCTCTGTTTCTGCTCGTGGCAAAGAACTTTTGAAGAATGCATCGGTGAAGATATCTCATGGGAAGAGGTATGGTTTGGTTGGACCCAATGGAAAGGGCAAGTCCACACTGCTGAAACTTCTTGCCTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGACAAGACAGCTCTTGAAGCCGTTGTTTCAGCTAATGAAGAACTAGTTAAAATTCGGCAAGAGGTTGCCTCTCTTCAGAATGCAGCTTCTGCTGTAGAAAGTGTAGACAAAGATGATGATGAAGAAGATGATACGGGAGAAAAGCTAGCAGAGCTATATGAAAAACTGCAATTGATGGGATCTGATGCTGCTGAAGCTCAGGCATCAAAGATATTAGCCGGTTTGGGTTTTACAAAGAATATGCAAGGCCGCCCTACAAAATCCTTCAGTGGTGGCTGGAGAATGAGAATTTCTTTAGCTCGAGCACTTTTTGTACAACCAACGCTATTATTACTTGATGAACCCACGAATCATCTCGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGTTGGAAGAAAACTTTGGTAGTTGTCTCACATGATAGAGATTTTCTCAATACAGTATGTACTGAGATTATTCATCTCCATGATTTGAAACTTCATTTCTATCGTGGAAATTTTGATGATTTTGAGAGTGGATATGAACAGCGTCGTAAAGAGATGAATAAGAAGTATGAGATTTATGACAAGCAGTTGAAAGCAGCTAAAAGGAGTGGAAACCGAGCCCAGCAAGAAAAGGTTAAGGATCGAGCTAAGTTTGCAGCAGCTAAGGAAGCATCTAAAAGCAAAGGAAAGGGCAAGGTTGATGAGGAAGATGCCCCATCGGAGGTTCCACAGAAGTGGAGGGATTACAGTGTGGAATTCCACTTTCCTGAACCCACTGAGCTTACACCCCCACTTTTACAGCTCATTGAGGTCAGCTTTAGCTACCCAAACCGAGAGGATTTTAGGCTATCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAACGGAGCTGGAAAATCCACGTTGTTGAATCTTCTAGCTGGTGATTTGGTCGCTTCTGAGGGTGAAGTACGAAGAAGTCAGAAGTTGAGGATAGGAAGATACTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACAGCTGTGCAGTATCTTCTGCGTCTCCATCCTGATCAGGAGGGACTCAGCAAGCAGGAGGCTGTTCGTGCAAAACTTGGTAAGTTTGGGTTACCAAGTCATAACCATCTTACTCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTCGGGTTGTCTTCACTTCTATTTCCATGTCAAAGCCACACATTTTATTGTTAGATGAACCAACCAATCATCTGGACATGCAAAGCATTGATGCATTGGCAGATGCACTGGATGAATTCACTGGTGGAGTTGTTCTTGTCAGTCATGATTCAAGATTGATATCACGTGTGTGTGATGATGAAGAAAGGAGTCAAATTTGGGTTGTCGAGGATGGTACTGTCAAAACTTTCCCCGGAACATTTGAGGATTACAAGGAGGATTTGATGAGAGAGATTAAAGCTGAAGTTGATGACTGA 2172 0.4351 MGRKKPEDAGPSAKTKTKDAPKKEKFSVSAMLASMDEKSDKPKKVSSSKPKPKSAPKASAYTDGIDLPPSDDEDDGLLEQEEEKNNASKRGSQQQRPDLKPLDVPIADKELKKREKKDLLAAHAAEQAKREALKDDHDAFTVVIGSRASVLDGDDDADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANEELVKIRQEVASLQNAASAVESVDKDDDEEDDTGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKNMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQEKVKDRAKFAAAKEASKSKGKGKVDEEDAPSEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVASEGEVRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSQIWVVEDGTVKTFPGTFEDYKEDLMREIKAEVDD 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00242 723 Gene3D - 460 723 IPR027417 -
Vimu2g00242 723 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 134 716 - -
Vimu2g00242 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 401 IPR027417 -
Vimu2g00242 723 Coils Coil 116 136 - -
Vimu2g00242 723 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 164 424 IPR003439 GO:0005524
Vimu2g00242 723 CDD ABCF_EF-3 164 394 - -
Vimu2g00242 723 MobiDBLite consensus disorder prediction 1 110 - -
Vimu2g00242 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 709 IPR027417 -
Vimu2g00242 723 Gene3D - 161 446 IPR027417 -
Vimu2g00242 723 FunFam ABC transporter F family member 4 461 723 - -
Vimu2g00242 723 Pfam ABC transporter 513 648 IPR003439 GO:0005524
Vimu2g00242 723 Coils Coil 413 433 - -
Vimu2g00242 723 Coils Coil 240 260 - -
Vimu2g00242 723 CDD ABCF_EF-3 496 698 - -
Vimu2g00242 723 SMART AAA_5 522 698 IPR003593 GO:0016887
Vimu2g00242 723 SMART AAA_5 188 393 IPR003593 GO:0016887
Vimu2g00242 723 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 496 721 IPR003439 GO:0005524
Vimu2g00242 723 ProSitePatterns ABC transporters family signature. 321 335 IPR017871 GO:0005524|GO:0016887
Vimu2g00242 723 FunFam ABC transporter F family member 4 162 445 - -
Vimu2g00242 723 MobiDBLite consensus disorder prediction 1 25 - -
Vimu2g00242 723 MobiDBLite consensus disorder prediction 430 471 - -
Vimu2g00242 723 Pfam ABC transporter 179 349 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00242 Vimu-Chr2 1338530 1340701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00242 496 699 Calmodulin-binding Proteins AT2G36910 27.928 2.74e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00242 K06184 - gmx:100806865 1193.72