Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00241 ATGACGGCGGCGGTAACTAGAAGAAGAGACGGTATGCGTGGCGTCCACCAGTGGGCGTGGCCTAAACCCAATAAATGGGTGAAGGGGAAAGTGGTTGGATGTGGATCTTTCGGCACTGTGCATTTGGCAATGAACAAATCAACGGGTGCCCTTTTTGTTGTAAAATCATCACATTCGAGGGCTGGACGTGAGGCTTTGGATGAAGAGGTAAAAATCCTGAAAATATTTAATTCCTCACCATATATCGTCCAATGTTTAGGGACAGAGGAGGAGGAGCAGGGCAAGCTGAATGTTTTTATGGAGTATATGTCAGGAGGTAGTTTGGCAGACGTGGCTCACAAATTCGGTGGGTCATTGGATGAAGAGGTGGTTCGTGTGTATACCAGGGAAATTCTTCACGGCCTGAACCATCTTCACCTTCATGGTATTGTACACTGCGATCTCAAGTGCAAGAACGTGCTTTTGGACCCACATGGCAACGTGAAGCTGGCAGATTTTGGATGTGCCAGAAGGGCAAATGAGTTGGGAAAGTCATTTGGTGGGACCCCTCTGTGGATGGCTCCTGAAGTTCTGAGGAACGAATCTGTTGATTTGTCTGCAGATATATGGTCCTTGGGATGCACAGTTATTGAGATGGCTACTGGCAGTCCTCCTTGGGCTCATCAGGTTTCAAATCACGTCAGTGATGTGCTCTGGATTGCTCATGGTGATTGCATTCCTCAGTTTCCACCACATTTCTCCAAGGAGGGTTTGGATTTCTTGAGCATGTGCTTGCAGAGAGATCCCCGTAAGAGGTCTACGCCTCAGAAGTTACTTTCCCATCCCTTTGTTACCTCAACACCACCTTCTCAACATCAACATGCTTCCTCTCCCGCAAGCGTCTTGGAGGTTCACGATTTCAGGGACTCTTGTGATATACATGATTTCTCTCTCACAAACACACTTGCATCTTACACTGATTACTCCAATGGACTAGCTGTGTGTAAAGCGGAAGACAGTGCCTTGGGCTCATCGGGGAATTGGATTACAGTTAGATCAGGCTGA 1044 0.4751 MTAAVTRRRDGMRGVHQWAWPKPNKWVKGKVVGCGSFGTVHLAMNKSTGALFVVKSSHSRAGREALDEEVKILKIFNSSPYIVQCLGTEEEEQGKLNVFMEYMSGGSLADVAHKFGGSLDEEVVRVYTREILHGLNHLHLHGIVHCDLKCKNVLLDPHGNVKLADFGCARRANELGKSFGGTPLWMAPEVLRNESVDLSADIWSLGCTVIEMATGSPPWAHQVSNHVSDVLWIAHGDCIPQFPPHFSKEGLDFLSMCLQRDPRKRSTPQKLLSHPFVTSTPPSQHQHASSPASVLEVHDFRDSCDIHDFSLTNTLASYTDYSNGLAVCKAEDSALGSSGNWITVRSG 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00241 347 SUPERFAMILY Protein kinase-like (PK-like) 17 313 IPR011009 -
Vimu2g00241 347 CDD STKc_MAPKKK 25 277 - -
Vimu2g00241 347 Pfam Protein kinase domain 28 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00241 347 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Vimu2g00241 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Vimu2g00241 347 ProSiteProfiles Protein kinase domain profile. 26 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00241 347 MobiDBLite consensus disorder prediction 266 292 - -
Vimu2g00241 347 SMART serkin_6 26 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00241 347 MobiDBLite consensus disorder prediction 271 291 - -
Vimu2g00241 347 Gene3D Transferase(Phosphotransferase) domain 1 23 329 - -
Vimu2g00241 347 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 26 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00241 Vimu-Chr2 1334612 1335655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00241 23 328 MAP Kinase Kinase Kinase AT1G54960 40.557 1.52e-67 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu2g00241 Pkinase 4.8e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00241 K20716 - gmx:100804518 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00241 2 1334612 1335655 Vimu2g00241 2 1334612 1335655 ECH