Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00235 ATGGAAGACGGCAAGAGTATGGGTCGAAAGGAGAAGAGGAAGACAATGAAGAAAATGAAGCGGAAGCAGACAAGGAAGGAGGCGGCGGAGAGGGAGCGACGGGAGGAGGAGGACCGCCTCAACGATCCGGAGGAGCAGAGGCGGATGCAATTGCTGGAGCAGGAGGAGGCGGAGAGAATGCAGAGGGACACCATCCTCTTTCAGGAGAGGGAGAAGGCTTTCATGGATATGATAATCACCCGACAACGACAGCAGCAGCAGCAGCAAGAACGAGAGCAAGAGCAGAGCATCGACCACGACAATGAATTTGAATACGTGGTTCAGGAAGAAGGCCCTCCGGAGATTATTTGGCAAGGAAACGAGATCATCTTCAATAAGAAACAGGTCAGAGTTAGGGTTCAGGACACCGACACTGACACCCACAATAACCATGCGCAGCAGAATGACGACATTAGACCTACATCCAATCCCTTACCCCCGGAATCGGAATTGGAATCGCGCACTCAGAACCTCCAGGACATTGCTCAACAAATACCCAATTTCGGAACTGAACAGGATAAAGCTCATTGCCCTTTTCATTTAAAAACGGGAGCATGTCGCTTTGGTAGGCGCTGTAGCAGAGTCCATTTTATCCCTGATAAATCCTCCACTCTTCTAATGGAAAACATGTACAACGGTCCTGGCCTTGCTTGCGATCGGGACCAAGACGAGGGCCTCGAGGAGGGATGGAGAATTTTCCCCATAAATGATTTTGTGTTATGTTTATCTGCCAACATTCTGTATAAAGTTGAGGGTGCAATTTCTTCGGGTTTTTATGAAGAGATTGATCGCTGCTTTGAAGAATTTTATGAGGATGTCCACACAGAATTCTTGAAGTTTGGGGAAATTGTGAACTTCAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTGTATGTACAGTACAAAGCTTTGGATTCTGCGCTGCATGCAGCAAATTTAATGAATCGTCACGACTTTGCTGGAAAACGGGTAACTTGTCAATTTGTTAACTTGACAAGATGGAAGGTTGCCATATGTGGCGAGTATATGAAATCGGGTTTCAAGACTTGTTCTCGAGGAACAGCATGCAATTTTATTCACTGTTTTCGTAATCCTGGTGGAGACTATGAATGGGCTGATTCTGACAAACCTCCCCCAAAATTTTGGGTAGAAAAAATGATCGCTTTATTTGGTTATTCTGATGATTATGAGACTTCAAGGGAGCAGGGAAATTTTAGTTTGTCAAAAACAGATTCTGACAGGTACCACTGTAGAAGGTCAAGATCCAGAGAGATGGATCAGATAAGTTGTGGTCATTCTGGTAGAAGAAAACATCAAGATGAAAGAAAGCAAAGAACTCCCTTTGAGGATCGGAATGCTAGCTTAAAAAACACTCATAAAAGAAAATCCAGAGGCAGAACTCCTGATACTGATTCTGACAGAGAATGGTTAGAAAAGGAGGAAATTAGGGAAAGACGCCATGAATACACTAGGAATGGCTCATTTAATAAGAGCAGGGATGAAAATAGCAGAAGCCACGAAGAGGATTCTGATGTGGATTGTGATACCAGGGACAATGAAAAACAGCATGGAAGAAACCCAAGAAAGTGCGACAAAGACATCAGGGTCTGGATTAATGAGGCTGCTGGTTTGGATGGGGACAGAGATGTGAGAAAGCACCGTATTAGGGAAAGCTCAGGACATCAGAGTGGTGACGCTTCTGAATCCAACAAAGATTTGTTTGGTAGAGTGGAGATGGAAACACTACATGATCAGTCTAGGAAAACATATAGTCACAGAAGATCGGGTGTTCAGGTGTCTGTAAAAGGAAGAGATCAAAACGACAAAGTTGATAGAGACGGGTCCTGGAAGGACAGTTACAAAGGAGATCATCACAAAAGTAAGTGA 1935 0.4429 MEDGKSMGRKEKRKTMKKMKRKQTRKEAAERERREEEDRLNDPEEQRRMQLLEQEEAERMQRDTILFQEREKAFMDMIITRQRQQQQQQEREQEQSIDHDNEFEYVVQEEGPPEIIWQGNEIIFNKKQVRVRVQDTDTDTHNNHAQQNDDIRPTSNPLPPESELESRTQNLQDIAQQIPNFGTEQDKAHCPFHLKTGACRFGRRCSRVHFIPDKSSTLLMENMYNGPGLACDRDQDEGLEEGWRIFPINDFVLCLSANILYKVEGAISSGFYEEIDRCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKALDSALHAANLMNRHDFAGKRVTCQFVNLTRWKVAICGEYMKSGFKTCSRGTACNFIHCFRNPGGDYEWADSDKPPPKFWVEKMIALFGYSDDYETSREQGNFSLSKTDSDRYHCRRSRSREMDQISCGHSGRRKHQDERKQRTPFEDRNASLKNTHKRKSRGRTPDTDSDREWLEKEEIRERRHEYTRNGSFNKSRDENSRSHEEDSDVDCDTRDNEKQHGRNPRKCDKDIRVWINEAAGLDGDRDVRKHRIRESSGHQSGDASESNKDLFGRVEMETLHDQSRKTYSHRRSGVQVSVKGRDQNDKVDRDGSWKDSYKGDHHKSK 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00235 644 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 189 209 IPR000571 GO:0046872
Vimu2g00235 644 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 377 IPR000571 GO:0046872
Vimu2g00235 644 MobiDBLite consensus disorder prediction 432 491 - -
Vimu2g00235 644 MobiDBLite consensus disorder prediction 1 59 - -
Vimu2g00235 644 Coils Coil 12 46 - -
Vimu2g00235 644 SUPERFAMILY RNA-binding domain, RBD 279 347 IPR035979 GO:0003676
Vimu2g00235 644 SMART c3hfinal6 349 378 IPR000571 GO:0046872
Vimu2g00235 644 SMART c3hfinal6 185 211 IPR000571 GO:0046872
Vimu2g00235 644 MobiDBLite consensus disorder prediction 620 644 - -
Vimu2g00235 644 MobiDBLite consensus disorder prediction 147 167 - -
Vimu2g00235 644 Gene3D - 215 345 IPR012677 -
Vimu2g00235 644 MobiDBLite consensus disorder prediction 565 644 - -
Vimu2g00235 644 MobiDBLite consensus disorder prediction 138 167 - -
Vimu2g00235 644 MobiDBLite consensus disorder prediction 432 472 - -
Vimu2g00235 644 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 169 533 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu2g00235 644 MobiDBLite consensus disorder prediction 23 59 - -
Vimu2g00235 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 347 IPR000504 GO:0003723
Vimu2g00235 644 ProSiteProfiles Zinc finger C3H1-type profile. 349 379 IPR000571 GO:0046872
Vimu2g00235 644 ProSiteProfiles Zinc finger C3H1-type profile. 184 212 IPR000571 GO:0046872
Vimu2g00235 644 PRINTS U2 auxiliary factor small subunit signature 190 209 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu2g00235 644 PRINTS U2 auxiliary factor small subunit signature 369 381 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu2g00235 644 PRINTS U2 auxiliary factor small subunit signature 304 326 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu2g00235 644 PRINTS U2 auxiliary factor small subunit signature 331 355 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu2g00235 644 PRINTS U2 auxiliary factor small subunit signature 209 229 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu2g00235 644 MobiDBLite consensus disorder prediction 504 544 - -
Vimu2g00235 644 MobiDBLite consensus disorder prediction 587 607 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu2g00235 zf-CCCH 4.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00235 K24273 - gmx:100789091 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00235 2 1306602 1316272 Vimu2g00235 2 1306602 1316272 ECH