Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00234 ATGGCTTCCGCTGCGCCAGGTTCGACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACCCTTCCGCGTGAAGGGTTGAGAGTTTATTACTTCCCCCAAGGTCATATGGAACAGGATCTTATTCGTTCTGAAATCGTTCACCTTTCAATGTTTCCTCATAACAATTTTGTGTGCACAATTTTGTCTGTTCTTGACCTGGCTCACTTTCTGCTCGAGGCATCTATGAATCAGGGGTTGGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTGTGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAAGCAGATCAAAGTGAGGTGACAAGCCCTGACGATCCTCTACCAGAACCTCCAAGATGTACTGTTCATTCATTCTGCAAGACTCTCACTGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGGCATGCAGATGATTGTCTGCCACCGCTGGATATGACGCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGCAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACTACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAGGGTGAAAATGGAGAGCTGCGAGTTGGAGTTAGGAGGCTCATGAGACAGCAAGGCAACATGCCATCTTCTGTTATATCTAGTCATAGTATGCATCTGGGTGTTCTTGCCACTGCATCTCATGCCATTGCCACAGGAACCTTGTTTTCTGTATTTTACAAGCCCAGAACTAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTCAAAGTCATAAACTTTCTGTTGGAATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACGATTGTGGGTGTTGGAGATAATAAATCGTCAGTCTGGACTAATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCATCTTCTATTTTGCGTCCTGATAGAGTTTCTCCGTGGGAATTGGAGCCACTATTGTCTACTCCTCCCACAAACTCCCAGCCTTCCCAAAGAAACAAGAGATCACGGCCTCCCGTTCTTCCTTCAACATTGGCTGATTCTTCTCTGCAAGGTGTACGGAAATCACCAGTTGATTCTGCACCATTCTCTTATCATGACCATCAACACGGACGAGACATCTATCCACCAGCCAAATTCAATTCTACTGCAACTGGCTTCCTTGGTTTTAGTGGGAACTGTTCTGCTTCCAACAAATCAATATATTGGTCTAGTAGGACAGAAAACTCTACAGAATCTTTTTTACCCGTAACACTTAAAGAATCTGGAGAGAAGAGAAATGGGACTGCAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTTGATAATTCTAATGGGGAAGAAAGCCTACCAATGGTCACTTTGTCAGGAAGGTTGGGTGATGATGTCCCCCTTCCATCTTTGGATGCTGAGTCTGACCAGCATTCGGAACCATCAAATATTAATCGATCTGATATTCCTTCGGTAAGTTGTGATGCTGAAAAATCATGCCTGCGGTCTCCCCAGGAGTCTCAGAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCAGTTGGAAGGGCTGTGGATTTAACACGGTTTGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAAATGTTTGACATCAAGGATGAACTTTGTGGATCCACAAAAAAATGGCAGGTTGTGTACACTGATAATGAAGACGACATGATGATGGTTGGGGATGACCCATGGCTTGAGTTTTGTAGCATTGTTAGGAAAATTTTCATCTATACTGCTGAGGAGGTGAAGAAGCTTTCACCTAAAATAGGACTTCCCATCAGTGAGGAAGTTAAACCCAGCAAAATGGACTCTGAAGCAGTAGTCAATCCTGAGGACCAGTCATCTATTGTGGGGAGAAACGACATGAACCTGGCAAACATTTCCTCATTGCCTGTAAGGAGGATGTCATTGGTGTATTCTGCATGTCTACAGGCACAGCATAACTGCAGCCAAGCAGAGGGTTGA 2157 0.4423 MASAAPGSTNDALYKELWHACAGPLVTLPREGLRVYYFPQGHMEQDLIRSEIVHLSMFPHNNFVCTILSVLDLAHFLLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKGENGELRVGVRRLMRQQGNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWTNSEWRSLKVQWDEPSSILRPDRVSPWELEPLLSTPPTNSQPSQRNKRSRPPVLPSTLADSSLQGVRKSPVDSAPFSYHDHQHGRDIYPPAKFNSTATGFLGFSGNCSASNKSIYWSSRTENSTESFLPVTLKESGEKRNGTANGCRLFGIQLLDNSNGEESLPMVTLSGRLGDDVPLPSLDAESDQHSEPSNINRSDIPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKDELCGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVKKLSPKIGLPISEEVKPSKMDSEAVVNPEDQSSIVGRNDMNLANISSLPVRRMSLVYSACLQAQHNCSQAEG 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00234 718 FunFam Auxin response factor 148 241 - -
Vimu2g00234 718 FunFam Auxin response factor 302 374 - -
Vimu2g00234 718 SUPERFAMILY DNA-binding pseudobarrel domain 139 268 IPR015300 -
Vimu2g00234 718 MobiDBLite consensus disorder prediction 523 537 - -
Vimu2g00234 718 Pfam B3 DNA binding domain 150 232 IPR003340 GO:0003677
Vimu2g00234 718 ProSiteProfiles PB1 domain profile. 561 654 IPR000270 GO:0005515
Vimu2g00234 718 FunFam Auxin response factor 556 650 - -
Vimu2g00234 718 CDD B3_DNA 148 239 IPR003340 GO:0003677
Vimu2g00234 718 Gene3D - 302 374 - -
Vimu2g00234 718 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 650 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu2g00234 718 Gene3D - 556 650 - -
Vimu2g00234 718 MobiDBLite consensus disorder prediction 512 537 - -
Vimu2g00234 718 Pfam Auxin response factor 265 347 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu2g00234 718 SUPERFAMILY CAD & PB1 domains 563 638 - -
Vimu2g00234 718 SMART B3_2 150 241 IPR003340 GO:0003677
Vimu2g00234 718 MobiDBLite consensus disorder prediction 370 406 - -
Vimu2g00234 718 Pfam AUX/IAA family 558 651 IPR033389 -
Vimu2g00234 718 MobiDBLite consensus disorder prediction 367 421 - -
Vimu2g00234 718 Gene3D - 147 244 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00234 Vimu-Chr2 1301827 1307628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00234 2 679 B3 DNA Binding Superfamily AT1G59750 66.571 0.0 888
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu2g00234 AUX_IAA 1.7e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00234 K14486 - gmx:100793224 1226.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00234 2 1301827 1307628 Vimu2g00234 2 1301827 1307628 ECH