Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00192 ATGGCTTTAGAGCAGGAATTGTCGCTGGGTCAGAATACGAATACGAATTCGAATAGGAATCCGAACCCAGTTGATTGCGTGGATGTTCGGGGTGAGGGTGGAGACGAGGGAGGGAAAGCGCCGAGACTGCCTCGGTGGACGAGGCAAGAAATTCTGGTTCTGATACAGGGAAAGAGAGACGCTGAGAACAAGTTCAGGAGGGGCCGAACGGCCGGATTGCCATTAGGGTCGGGTCAGGTGGAGCCCAAATGGGCATCGGTCTCTTCCTACTGCAGAAAGCATGGAGTCAACAGAGGTCCGGTTCAGTGCCGGAAAAGGTGGAGCAATTTGGCCGGAGACTACAAGAAGATCAAAGAATGGGAATCTCAGATAAGAGAGGAGTCGGATTCCTTTTGGGTCATGAGAAACGATTTAAGGAGAGACCGAAAATTGCCCGGATTTTTTGACAAGGAAGTTTATGATATTCTCGATTCAGGCTCCCAAGGTCCGGCGTTGGCTCTCGCTCTTTCATCGCCTCCTTCAACGACAGTAACGGTGGGCAAGGACATGCGCATGGACATGGACACCAAAAGAGGGTATGCACCTGCCCCTTCCTCAGCCTCAGACCCTGCCCCTGCCCCTGCCCCTGCTGAGCCTGAGGAGCCTCACCTCTACGATAGTAATCGGAGCGTGCCTGTTGAGGATGGTTTGTTTTCAGATTTCGAACAAGATGAAGTCTCTGCCAGTCCTGAGAAGAAGGACATTTTTCCGCCCTCCAATAGGGACTTCCGTGCTCCCATTCCTGTATCAGGTGTGACTAACGAGAAACAGTCTACTCCAAATCCAGAAATGGGTTCTACCTCTCAAGGAGAGCGGAAAAGGAAGCGATTATCAACTGACGGAGGGGAGGAAACTTTGCAAATTCATTTAATTGATGTCTTAGAAAGAAATGGCAAGATGCTAAGTGCTCAACTTGAAGCGCAGAATATAAATTTCCAGTTGGATCGTGAGCAGCGGAAAATCAATGCTCTCCACAAACTTTTGAGTTTAGAAGATGATGATCGTCATGAAGAGCATAAGGAGCCACAAGCGCTTCTTTATGGACCATTTTCGGCTGCATCAGAGCACACATCTAACCTCGGTTTATGCGCAGATCGTATAACCCCAAATTCGTGGGACGAATTGGTTATCACTGCTAATTATGCCATCAAAGGTGGAAAAGGAGAGCGATGA 1212 0.4917 MALEQELSLGQNTNTNSNRNPNPVDCVDVRGEGGDEGGKAPRLPRWTRQEILVLIQGKRDAENKFRRGRTAGLPLGSGQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREESDSFWVMRNDLRRDRKLPGFFDKEVYDILDSGSQGPALALALSSPPSTTVTVGKDMRMDMDTKRGYAPAPSSASDPAPAPAPAEPEEPHLYDSNRSVPVEDGLFSDFEQDEVSASPEKKDIFPPSNRDFRAPIPVSGVTNEKQSTPNPEMGSTSQGERKRKRLSTDGGEETLQIHLIDVLERNGKMLSAQLEAQNINFQLDREQRKINALHKLLSLEDDDRHEEHKEPQALLYGPFSAASEHTSNLGLCADRITPNSWDELVITANYAIKGGKGER 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00192 403 Gene3D - 46 116 - -
Vimu2g00192 403 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 22 334 - -
Vimu2g00192 403 MobiDBLite consensus disorder prediction 264 280 - -
Vimu2g00192 403 MobiDBLite consensus disorder prediction 1 42 - -
Vimu2g00192 403 MobiDBLite consensus disorder prediction 238 252 - -
Vimu2g00192 403 MobiDBLite consensus disorder prediction 188 294 - -
Vimu2g00192 403 Pfam Myb/SANT-like DNA-binding domain 45 134 IPR044822 -
Vimu2g00192 403 MobiDBLite consensus disorder prediction 1 23 - -
Vimu2g00192 403 ProSiteProfiles Myb-like domain profile. 45 111 IPR001005 -
Vimu2g00192 403 CDD GT1 44 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00192 Vimu-Chr2 1131288 1140250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00192 24 119 Trihelix Transcription Factor Family AT1G76890 26.042 4.13e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu2g00192 Myb_DNA-bind_4 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00192 - - gmx:100779050 432.95