Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00187 GAAACTGGAATGGGTTGCTTTTCTTGTTTCGATTCGAGGGAAGACGAGAAGCTGAATCCCAATCCTCACCAGGAAAACCATCATCATCTTCATCATCATCACGATCATGATCTTAATCCCCCTATCCCCTCTCGTATTTCCAGACTGCCCTCTGCCTCTGCCGGAGCAGACAAGCTACGCTCATCTAGCAATGCCAATGGTAACAATGGTGACTCCAAAAGGGAATTGGCTGCTCTCAAGGACGGACCTGCTGTACAAATTGCCGCACAGACTTTCACTTTCCGTGAGCTGGCAGCCGCCACCAAAAATTTCAGGCCCCAATCCTTTTTAGGGGAAGGTGGCTTCGGAAGGGTCTACAAGGGCCGCCTTGAAACCACTGGTCAGGCTGTGGCTGTTAAACAGTTAGACAGAAACGGTCTTCAGGGCAACCGAGAATTCCTCGTGGAGGTTCTCATGCTCAGTCTTCTACACCACCCTAATCTTGTCAATCTCATTGGATACTGTGCGGACGGGGACCAACGCCTCTTAGTTTATGAGTTTATGCCATTGGGATCATTGGAAGACCACCTTCATGGTATTCTTCTTTTCTACTCCTCCCATTTCAATCGTTACAATTTCTTTTTTAATTTTAGTTCAGTATTTGATGATCTTCCCCCGGAGAAGGAACCATTGGATTGGAACACTAGGATGAAAATAGCTGCTGGGGCAGCAAAAGGATTGGAATACCTTCACGACAAAGCAAATCCTCCTGTCATTTATAGAGATTTCAAATCGTCTAATATATTACTTGACGAAGATTATCATCCAAAGCTTTCAGACTTTGGGCTTGCAAAGCTCGGACCAGTTGGTGACAAATCACACGTGTCCACCCGTGTCATGGGAACTTATGGCTATTGTGCCCCAGAATATGCTATGACTGGACAGCTGACTGTGAAGTCTGATGTATATAGTTTTGGGGTAGTCTTCTTGGAGCTTATTACTGGGCGTAAAGCCATTGACAGCACTCGACCCCATGGAGAACAAAACCTTGTCACATGGGCACGTCCACTGTTCAATGACCGCAGAAAGTTTCCAAAGTTAGCAGATCCAGAGCTGCATGGACGGTATCCCATGCGGGGTCTTTACCAAGCTCTAGCTGTGGCATCAATGTGCATTCAAGAACAGGCCGCAGCGCGTCCTCTCATTGGGGATGTGGTGACAGCCCTTTCTTTTCTAGCGAACCAGGCATATGACCATAAGGGAGGTGGTGATGATAAAAGGAACAGAGATGATCAGGGTGGAAGAATATTGAAAAATGACCAAGGTGGAGGATCTGGAAGGAGATGGGATTTGGAAGGGTCTGAGAAAGATGAGTCCCCACGTGAAACTGCAAGGATGTTAAATAACAGGGATCTTGATAGAGAACGTGCTGTGGCTGAAGCAAAGATGTGGGGAGAGAATTGGAGAGAGAAAAGACGACAGAGTGCGCAGGGCAGTTTTGATGGTTCTAACGCCTAG 1497 0.4703 ETGMGCFSCFDSREDEKLNPNPHQENHHHLHHHHDHDLNPPIPSRISRLPSASAGADKLRSSSNANGNNGDSKRELAALKDGPAVQIAAQTFTFRELAAATKNFRPQSFLGEGGFGRVYKGRLETTGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHGILLFYSSHFNRYNFFFNFSSVFDDLPPEKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEDYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTRPHGEQNLVTWARPLFNDRRKFPKLADPELHGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSFLANQAYDHKGGGDDKRNRDDQGGRILKNDQGGGSGRRWDLEGSEKDESPRETARMLNNRDLDRERAVAEAKMWGENWREKRRQSAQGSFDGSNA 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00187 498 SUPERFAMILY Protein kinase-like (PK-like) 89 400 IPR011009 -
Vimu2g00187 498 MobiDBLite consensus disorder prediction 17 74 - -
Vimu2g00187 498 Gene3D Transferase(Phosphotransferase) domain 1 204 425 - -
Vimu2g00187 498 CDD STKc_IRAK 110 402 - -
Vimu2g00187 498 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Vimu2g00187 498 MobiDBLite consensus disorder prediction 410 498 - -
Vimu2g00187 498 FunFam Serine/threonine-protein kinase PBS1 77 180 - -
Vimu2g00187 498 Gene3D Phosphorylase Kinase; domain 1 88 180 - -
Vimu2g00187 498 PANTHER OS07G0668900 PROTEIN 6 413 - -
Vimu2g00187 498 MobiDBLite consensus disorder prediction 412 429 - -
Vimu2g00187 498 MobiDBLite consensus disorder prediction 56 71 - -
Vimu2g00187 498 Pfam Protein tyrosine and serine/threonine kinase 108 334 IPR001245 GO:0004672|GO:0006468
Vimu2g00187 498 FunFam Serine/threonine-protein kinase PBS1 209 420 - -
Vimu2g00187 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Vimu2g00187 498 MobiDBLite consensus disorder prediction 442 489 - -
Vimu2g00187 498 MobiDBLite consensus disorder prediction 17 41 - -
Vimu2g00187 498 ProSiteProfiles Protein kinase domain profile. 104 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00187 Vimu-Chr2 1100571 1103550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00187 4 486 Glycoside Hydrolase AT3G07070 53.292 4.26e-165 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vimu2g00187 PK_Tyr_Ser-Thr 3.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00187 K13430 - gmx:100777987 798.89