Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00182 TTGCAGACTCAATCCATGGCAGCTGCATTTGCATCTTCGACTACCACATTCAGACTGTCAAATTTTGGAGATATCAAAGGTTTGCACCTCCCTAACCCTAATTCTAATAACCTCAAGTTTAGGACGCGGGCGTCTGGGTTTGGCGGTTGTCATGGAGTGAAATTGAGTGTGAGAGAAAGGGAAGTTGGAAGGGGTTTGAGGGTTCGGGCTAGTTCTTCTTCGGGGGAGGACGCAAGTGTTCAGGCCAAAGTGACTCAGAAAGTATTCTTCGACATCAGTATCGGAAATCCAGTTGGGAAGCTTGTCGGAAGGGTTGTCATTGGACTGTACGGCGACGATGTTCCCCAAACAGCCGAGAACTTCCGTGCCCTCTGCACCGGAGAGAAGGGTTTTGGGTATAAGGGCTCTGCCTTCCATCGTGTTATCAAGGATTTCATGATTCAAGGGGGCGATTTTGACAAAGGAAATGGAACTGGAGGCAAGAGTATATATGGTCGCACTTTCAAAGATGAGAATTTTGTTTTGTCTCATACTGGACCCGGAGTTGTTAGCATGGCAAATGCAGGTCCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCATGGTTGGATCAGAGACATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATCGAATCCCTGGAGACAGATAGGGGTGACCGTCCTAGAAAAAACGTGACCATCAGCGACTGTGGTGAGCTTCCAATTGCTTGA 762 0.4724 MQTQSMAAAFASSTTTFRLSNFGDIKGLHLPNPNSNNLKFRTRASGFGGCHGVKLSVREREVGRGLRVRASSSSGEDASVQAKVTQKVFFDISIGNPVGKLVGRVVIGLYGDDVPQTAENFRALCTGEKGFGYKGSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFVLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESLETDRGDRPRKNVTISDCGELPIA 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00182 253 Gene3D - 75 253 IPR029000 -
Vimu2g00182 253 SUPERFAMILY Cyclophilin-like 80 250 IPR029000 -
Vimu2g00182 253 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 87 250 - -
Vimu2g00182 253 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 133 150 IPR020892 GO:0003755|GO:0006457
Vimu2g00182 253 CDD cyclophilin_ABH_like 87 248 - -
Vimu2g00182 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 196 208 IPR002130 GO:0000413|GO:0003755
Vimu2g00182 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 150 IPR002130 GO:0000413|GO:0003755
Vimu2g00182 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 181 196 IPR002130 GO:0000413|GO:0003755
Vimu2g00182 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 209 224 IPR002130 GO:0000413|GO:0003755
Vimu2g00182 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 124 IPR002130 GO:0000413|GO:0003755
Vimu2g00182 253 FunFam Peptidyl-prolyl cis-trans isomerase 74 253 - -
Vimu2g00182 253 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 102 248 IPR002130 GO:0000413|GO:0003755
Vimu2g00182 253 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 89 249 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00182 Vimu-Chr2 1088396 1090851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00182 103 244 U-box Gene Family AT5G67530 48.951 4.78e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00182 K03768 - gmx:100777088 390.578