Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00177 ATGGGATCTTGCCTCTCCGTCGCGGGGGCACCACCGGATGCATGTGATGACCGCTTGTGGAGTCCAACCGAATTGTCGGATTATAGGATTGAAATGCGGGTTCACAGAGTTCCTGGGAGATTATTCTTGAACGGTTCATCGCAGATTGCTTCCTTGTACTGCAAAAAAGGCTGCGGAGGGATCAACCAGGATGCAATGCTTGTTTGGGACAACTTCTGTTCAAACGACGGCACCGTTTTATGCGGTGTCTTCGATGGCCACGGACCTTATGGCCATTTGGTTGCAAAGAAACTCAGGGATTCCTTTCCTTTAAAGCTCATGGCTCAGTGGAATTCCTCAAATCCTGACAGCACATACAGCTATCGCAATTTCTTTAGCACATCCATCAACAACGACTTGGAACCTTGTACCATTGCCCCAACTGAAATTGCGACGCTGAGACAATCTTTTATCACAGCTTCGAAGATCATGGACAGAGACCTCAGAATTCAGAATCAGATCGATTGCTCCTCTAGTGGCTCCACGGCTGTTACATTGCTCAAGCAGGGCCACGACCTTCTTATTGCTAATGTGGGTGACTCCAGAGCTGTATTGGCTACCCATGACCGCAATGGTTCCCTTATTGCCATTCAGCTCACCACTGACCTTAAGCCTGATCTTCCAAGGGAAGCAGAGAGGATAAGGATTTGTAAGGGAAGAGTATTCGCCCTTCGAAATGAACCGGGGATTTATAGATTATGGCTTCCAAATGTTGATTCCCCTGGGCTTGCCATGTCAAGGTCTTTTGGAGATTTTTGTCTCAAGGACTTTGGACTCGTCTCTGTTCCTGATCTCTCTTATCACCGCCTCAATCATAGGGATCAATTTGTTGTGTTAGCCACAGATGGGGTATGGGATGTTTTATCAAACGAAGAAGTTGTGTCCATTGTGTCATCTAGTCCACGCTCTTCAGCGGCTCGAATGCTGGTTGACGCAGCTGTTCATGCATGGAAAACCAAGCTTCCCACTTCTAAGGTTGATGATTGCTCTGTAGTTTGCCTCTTCTTTAATTCCATGTCGGACTCAAAACCATCGACTCCCAAACAAGACCCATCAAATGTCGTTGAGCAGTAA 1113 0.4708 MGSCLSVAGAPPDACDDRLWSPTELSDYRIEMRVHRVPGRLFLNGSSQIASLYCKKGCGGINQDAMLVWDNFCSNDGTVLCGVFDGHGPYGHLVAKKLRDSFPLKLMAQWNSSNPDSTYSYRNFFSTSINNDLEPCTIAPTEIATLRQSFITASKIMDRDLRIQNQIDCSSSGSTAVTLLKQGHDLLIANVGDSRAVLATHDRNGSLIAIQLTTDLKPDLPREAERIRICKGRVFALRNEPGIYRLWLPNVDSPGLAMSRSFGDFCLKDFGLVSVPDLSYHRLNHRDQFVVLATDGVWDVLSNEEVVSIVSSSPRSSAARMLVDAAVHAWKTKLPTSKVDDCSVVCLFFNSMSDSKPSTPKQDPSNVVEQ 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00177 370 SMART PP2C_4 43 347 IPR001932 -
Vimu2g00177 370 SUPERFAMILY PP2C-like 46 351 IPR036457 -
Vimu2g00177 370 ProSiteProfiles PPM-type phosphatase domain profile. 46 349 IPR001932 -
Vimu2g00177 370 Pfam Protein phosphatase 2C 118 325 IPR001932 -
Vimu2g00177 370 Gene3D - 45 352 IPR036457 -
Vimu2g00177 370 PANTHER PROTEIN PHOSPHATASE 58 347 IPR015655 GO:0004722|GO:0006470
Vimu2g00177 370 CDD PP2Cc 48 349 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00177 Vimu-Chr2 1053428 1054821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00177 19 353 PP2C-type Phosphatase Gene Family AT1G16220 53.314 9.48e-132 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00177 - - gmx:100816114 500.36