Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00167 ATGCCATCGCATCCATCTCTATCTAAATTGCTTATTTCTAAATCCTCCAACCAAACCAACTTGCTTTCTGCTTTCTGCTTTCTACTTTCTCCATCTCCCTCTCCCTCTCCACCCATGTATCCTTCTTCCTCCTCCTCTTCCTCTTCTTCTTCCTCTTCTCAATCCATGACCCACGCGCCAACTGGCCTCACGCGCTACGGCTCCGCACCGGGCTCTCTCCTCACCACCACCGTCGATGCTCTCATCGGAGGATCACGCCCCACCCCCACCCCTACCCCTTACTATTCCGGAGGAGACTCTTCCGACTCCACCTGCAAAGACCAAACATCATATCACAACCACGCCCTCGGATCCGCCTTGCTCCGTCAGAAAAGCTCTCCCGCCGGCTTCCTCTCCCACCTAGCATCCACACCCACCGCCCCCACCTCCAATCACAACAACCACAATGGAGCCGGGTTCACAATCACGCGGGGTTCTCGGCTGAAGTCCCAGCTGAGCTTCACGGGTCACTGCCAAGAATCTCTCTGCGGCGGCGATAACACTAACAATGTGGTGCTTGGCGATCATGCCACCTTTGGAATGGAGCCTTGGGACAGTTCTCATTCTCATTCTAATTCCATCGCCTTTTCCGCTCCTCCAACTAAGCGCTCCAAAAACTCCAACTCCAGCGATCAAGACATTCTCCATTGCCTCAACGCCTTGGAATCTCAGTTTAGCCTTCCACAGACCACTCTCGAAATGGCAACTGTCGAGAAGCTCTTGCACATTCCTGAAGACTCCGTCCCTTGTAAAATCCGTGCTAAGCGAGGCTGTGCCACTCATCCCCGCAGCATTGCTGAGCGGGAGAGAAGAACCAGAATAAGTGGAAAGCTCAAGAAATTGCAGGACCTTGTACCTAATATGGATAAGCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAGCATATTAAAGGTCTTCAAACACAGGTTCAGCCTGGAGATTACTCAGCTGCTGATGGAAAAATAGTTCAATATCAAGCTTGGGATATTTTAGCACCCCTAAAACGTGCGTTAGCTCTTGAAAACAAACAACTTGCTGATACAGGGCAATGTTACTGTCCTCCTTTGAGATTGTCGTGCTATCTGGTCACTTCGAACAACGCTATTTTTCTCACGTAG 1164 0.5077 MPSHPSLSKLLISKSSNQTNLLSAFCFLLSPSPSPSPPMYPSSSSSSSSSSSSQSMTHAPTGLTRYGSAPGSLLTTTVDALIGGSRPTPTPTPYYSGGDSSDSTCKDQTSYHNHALGSALLRQKSSPAGFLSHLASTPTAPTSNHNNHNGAGFTITRGSRLKSQLSFTGHCQESLCGGDNTNNVVLGDHATFGMEPWDSSHSHSNSIAFSAPPTKRSKNSNSSDQDILHCLNALESQFSLPQTTLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQTQVQPGDYSAADGKIVQYQAWDILAPLKRALALENKQLADTGQCYCPPLRLSCYLVTSNNAIFLT 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00167 387 CDD bHLH_AtbHLH_like 276 326 IPR045239 -
Vimu2g00167 387 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 69 369 - -
Vimu2g00167 387 MobiDBLite consensus disorder prediction 201 223 - -
Vimu2g00167 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 326 IPR036638 GO:0046983
Vimu2g00167 387 SMART finulus 277 327 IPR011598 GO:0046983
Vimu2g00167 387 Pfam Helix-loop-helix DNA-binding domain 276 322 IPR011598 GO:0046983
Vimu2g00167 387 MobiDBLite consensus disorder prediction 41 109 - -
Vimu2g00167 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 321 IPR011598 GO:0046983
Vimu2g00167 387 Gene3D - 268 329 IPR036638 GO:0046983
Vimu2g00167 387 MobiDBLite consensus disorder prediction 33 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00167 Vimu-Chr2 982365 984524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00167 120 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 55.204 6.90e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu2g00167 HLH 6.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00167 - - vra:106771988 559.681